Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8154

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8153: 16521 - HMMPfam-Chalcone-flavanone isomerase-PF02431,SUPERFAMILY--SSF54626, at 537692 to 539063 16521 mRNA_8154: 16522 - HMMPfam-Ketopantoate reductase PanE/ApbA-PF02558,HMMPfam-Ketopantoate reductase PanE/ApbA C terminal-PF08546,SUPERFAMILY--SSF48179, at 539197 to 540895 16522 mRNA_8155: 16523 - K15361 WDR48, UAF1 WD repeat-containing protein 48, at 541110 to 545271 16523

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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538,384 - 16521 mRNA_8153 0.50 0.1
538,565 - 16521 mRNA_8153 0.64 -0.2
538,843 - 16521 mRNA_8153 0.84 -0.7
538,845 + 16521 mRNA_8153 0.84 -0.2
538,847 + 16521 mRNA_8153 0.84 0.2
538,853 + 16521 mRNA_8153 0.85 -0.3
538,855 - 16521 mRNA_8153 0.85 -0.7
538,861 + 16521 mRNA_8153 0.85 1.6
538,887 + 16521 mRNA_8153 0.87 -0.5
539,135 + -0.2
539,158 - -0.8
539,164 - -0.7
539,285 + -0.1
539,297 - -2.2
539,303 + -0.4
539,305 + 0.4
539,462 - 16522 mRNA_8154 0.16 -0.5
539,472 + 16522 mRNA_8154 0.16 0.1
539,478 + 16522 mRNA_8154 0.17 -0.8
539,730 - 16522 mRNA_8154 0.31 1.5
540,511 + 16522 mRNA_8154 0.77 -0.4
540,537 - 16522 mRNA_8154 0.79 0.5
540,650 + 16522 mRNA_8154 0.86 0.2
540,854 + -0.6
540,899 + -0.4
540,916 + -1.7
541,339 + -1.2