Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7784

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7783: 16151 - HMMPfam-Mitochondrial carrier protein-PF00153,SUPERFAMILY--SSF103506, at 1058702 to 1060371 16151 mRNA_7784: 16152 - HMMPfam-Tetratricopeptide repeat-PF00515,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 1060507 to 1063006 16152 mRNA_7785: 16153 - HMMPfam-Tetratricopeptide repeat-PF00515,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 1063433 to 1065460 16153

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,059,787 - 16151 mRNA_7783 0.65 -1.5
1,060,126 + 16151 mRNA_7783 0.85 -0.5
1,060,136 - 16151 mRNA_7783 0.86 -0.3
1,060,255 - 0.1
1,060,265 + 0.8
1,060,271 + -0.9
1,060,271 - -1.7
1,060,274 + 0.2
1,060,285 + 0.1
1,060,400 - 0.7
1,060,428 - -1.7
1,060,439 + -0.5
1,060,705 + -1.9
1,060,730 + -0.7
1,061,087 + 16152 mRNA_7784 0.23 0.4
1,061,160 + 16152 mRNA_7784 0.26 0.0
1,061,447 + 16152 mRNA_7784 0.38 0.5
1,061,720 - 16152 mRNA_7784 0.49 0.4
1,061,827 - 16152 mRNA_7784 0.53 -0.4
1,061,830 - 16152 mRNA_7784 0.53 0.0
1,061,887 + 16152 mRNA_7784 0.55 1.7
1,061,999 + 16152 mRNA_7784 0.60 -1.4
1,062,183 - 16152 mRNA_7784 0.67 -1.3
1,062,232 + 16152 mRNA_7784 0.69 -0.3
1,062,334 - 16152 mRNA_7784 0.73 1.1
1,062,901 + 0.2
1,062,906 + -0.1
1,062,909 - 1.4
1,062,920 + -2.9
1,062,949 + 0.1
1,063,000 - 0.3
1,063,069 - -0.4
1,063,188 - 0.8
1,063,201 + -1.0
1,063,206 + -2.2
1,063,207 - 0.9
1,063,216 - 0.1
1,063,224 + -1.4
1,063,243 + 0.7
1,063,323 - -0.3
1,063,324 - -1.3
1,063,337 - -0.1
1,063,338 + -1.6
1,063,341 - -0.3
1,063,350 - -0.6
1,063,430 - -1.4
1,063,440 + -0.8
1,063,453 - -0.2
1,063,630 + 0.3
1,063,657 + 16153 mRNA_7785 0.11 -1.6
1,063,779 + 16153 mRNA_7785 0.17 -0.6
1,063,936 + 16153 mRNA_7785 0.25 0.2