Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7515

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7514: 15882 - K11757 PBRM1, PB1 protein polybromo-1, at 471027 to 473637 15882 mRNA_7515: 15883 - K07827 KRAS, KRAS2 GTPase KRas, at 473987 to 475256 15883 mRNA_7516: 15884 - HMMPfam-Protoglobin-PF11563, at 475785 to 476732 15884

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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473,232 - 15882 mRNA_7514 0.84 -1.0
473,232 - 15882 mRNA_7514 0.84 0.2
473,283 - 15882 mRNA_7514 0.86 0.0
473,371 - 15882 mRNA_7514 0.90 0.8
473,380 + -0.3
473,380 + -1.2
473,402 + -0.6
473,403 + -0.1
473,405 + -0.4
473,663 - -0.8
473,669 + -2.0
473,673 - 0.3
473,679 - -1.5
473,758 + -0.1
473,856 - -0.4
473,907 - 0.1
474,014 + 1.5
474,017 + 0.8
474,151 - 15883 mRNA_7515 0.13 2.6
474,161 + 15883 mRNA_7515 0.14 -0.5
474,172 - 15883 mRNA_7515 0.15 2.0
474,420 - 15883 mRNA_7515 0.34 1.9
474,497 + 15883 mRNA_7515 0.40 0.7
474,498 + 15883 mRNA_7515 0.40 1.9
474,590 + 15883 mRNA_7515 0.47 0.5
474,617 - 15883 mRNA_7515 0.50 2.1
474,632 - 15883 mRNA_7515 0.51 2.4
474,641 + 15883 mRNA_7515 0.51 1.8
474,656 - 15883 mRNA_7515 0.53 2.7
474,678 - 15883 mRNA_7515 0.54 0.2
474,680 - 15883 mRNA_7515 0.55 1.0
474,693 - 15883 mRNA_7515 0.56 2.5
474,701 - 15883 mRNA_7515 0.56 0.5
474,701 + 15883 mRNA_7515 0.56 1.7
474,705 + 15883 mRNA_7515 0.57 2.3
474,716 + 15883 mRNA_7515 0.57 2.2
474,719 - 15883 mRNA_7515 0.58 1.6
474,731 + 15883 mRNA_7515 0.59 1.8
474,788 + 15883 mRNA_7515 0.63 0.6
474,789 - 15883 mRNA_7515 0.63 3.0
474,796 + 15883 mRNA_7515 0.64 0.9
474,796 + 15883 mRNA_7515 0.64 3.0
474,798 + 15883 mRNA_7515 0.64 1.9
474,804 + 15883 mRNA_7515 0.64 1.9
474,818 - 15883 mRNA_7515 0.65 2.0
474,833 + 15883 mRNA_7515 0.67 2.7
474,833 - 15883 mRNA_7515 0.67 2.1
474,844 - 15883 mRNA_7515 0.67 1.7
474,849 + 15883 mRNA_7515 0.68 2.3
474,862 - 15883 mRNA_7515 0.69 1.3
474,872 - 15883 mRNA_7515 0.70 0.2
474,876 - 15883 mRNA_7515 0.70 2.8
474,897 - 15883 mRNA_7515 0.72 1.7
474,903 + 15883 mRNA_7515 0.72 2.2
474,905 + 15883 mRNA_7515 0.72 2.8
474,927 + 15883 mRNA_7515 0.74 2.7
474,928 + 15883 mRNA_7515 0.74 1.4
474,937 - 15883 mRNA_7515 0.75 1.9
474,949 - 15883 mRNA_7515 0.76 2.1
474,981 + 15883 mRNA_7515 0.78 1.1
475,001 - 15883 mRNA_7515 0.80 1.4
475,009 - 15883 mRNA_7515 0.80 1.9
475,027 + 15883 mRNA_7515 0.82 1.6
475,033 - 15883 mRNA_7515 0.82 2.2
475,043 + 15883 mRNA_7515 0.83 1.4
475,063 - 15883 mRNA_7515 0.85 1.9
475,064 + 15883 mRNA_7515 0.85 1.5
475,066 + 15883 mRNA_7515 0.85 0.3
475,225 - 1.6
475,314 + 1.9
475,317 - 1.1
475,330 - 1.8
475,336 + 1.4
475,338 + 1.5
475,340 + 1.1
475,365 - 1.8
475,490 - -0.1
475,494 - 0.2
475,513 + 0.7
475,549 + -0.2
475,647 - 0.1
475,651 - -0.3
475,664 - 0.0
475,672 - -1.0
475,682 - -1.9
475,686 + 0.4
475,820 - -1.2
475,959 - 15884 mRNA_7516 0.18 -0.0