Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7200

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7199: 15567 - HMMPfam-Hemerythrin HHE cation binding domain-PF01814, at 1108363 to 1109217 15567 mRNA_7200: 15568 - K14816 REI1 pre-60S factor REI1, at 1109776 to 1111554 15568 mRNA_7201: 15569 - K10967 KTR1_3 alpha 1,2-mannosyltransferase, at 1111726 to 1113474 15569

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,108,861 + 15567 mRNA_7199 0.58 1.2
1,109,003 + 15567 mRNA_7199 0.75 -0.8
1,109,008 - 15567 mRNA_7199 0.75 0.7
1,109,285 + -1.3
1,109,415 - 0.0
1,109,435 - 0.5
1,109,435 + -0.9
1,109,440 + 0.3
1,109,440 + 1.4
1,109,446 - -0.0
1,109,449 + 0.1
1,109,454 + 0.9
1,109,465 + -0.3
1,109,580 + -0.1
1,109,754 + -0.7
1,111,028 + 15568 mRNA_7200 0.70 1.3
1,111,164 - 15568 mRNA_7200 0.78 -0.4
1,111,164 + 15568 mRNA_7200 0.78 1.7
1,111,173 + 15568 mRNA_7200 0.79 0.9
1,111,456 - 0.1
1,111,603 - 0.0
1,111,607 + -0.5
1,111,762 + -0.1
1,111,900 - 0.1
1,111,928 - 15569 mRNA_7201 0.12 -0.9
1,112,234 + 15569 mRNA_7201 0.29 0.1