Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7071

Experiments: YNB Oleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7070: 15438 - K13953 adhP alcohol dehydrogenase, propanol-preferring, at 812673 to 814209 15438 mRNA_7071: 15439 - BLAST histone H3 h3.1 [Schizosaccharomyces japonicus yF..., at 814580 to 815327 15439 mRNA_7072: 15440 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 815614 to 818476 15440

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
remove
813,730 + 15438 mRNA_7070 0.69 -0.5
813,825 + 15438 mRNA_7070 0.75 -1.5
814,067 - 0.3
814,185 + -0.2
814,322 + 0.1
814,333 + -0.6
814,344 - -0.6
814,354 - 0.7
814,357 - -0.7
814,357 + 0.6
814,368 + 0.1
814,407 - 0.5
814,417 - -0.4
814,472 - 1.7
814,478 - -0.5
814,532 + -1.0
814,652 + 0.0
814,665 - 15439 mRNA_7071 0.11 1.7
814,807 - 15439 mRNA_7071 0.30 1.5
814,820 - 15439 mRNA_7071 0.32 0.6
815,260 - -1.0
815,415 + 0.1
815,576 + -2.6