Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6722

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6721: 15089 - K14554 UTP21, WDR36 U3 small nucleolar RNA-associated protein 21, at 1535454 to 1538954 15089 mRNA_6722: 15090 - K17908 WIPI, ATG18 autophagy-related protein 18, at 1539294 to 1541156 15090 mRNA_6723: 15091 - K01078 E3.1.3.2 acid phosphatase, at 1542029 to 1544062 15091

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,539,005 - -0.7
1,539,036 + -1.5
1,539,037 - -0.3
1,539,056 - 0.1
1,539,123 + -1.8
1,539,373 - -1.2
1,539,461 - -1.8
1,539,611 + 15090 mRNA_6722 0.17 0.1
1,539,769 - 15090 mRNA_6722 0.25 -2.2
1,539,906 - 15090 mRNA_6722 0.33 -2.6
1,539,959 + 15090 mRNA_6722 0.36 0.5
1,540,061 - 15090 mRNA_6722 0.41 -1.4
1,540,140 - 15090 mRNA_6722 0.45 -1.8
1,540,678 + 15090 mRNA_6722 0.74 -0.9
1,540,914 - 15090 mRNA_6722 0.87 -2.5
1,541,215 - 0.5
1,541,255 - -3.4
1,541,510 - -0.1
1,541,644 + -0.9
1,541,806 - 0.4
1,541,815 - 1.1
1,541,820 + 0.8
1,541,930 - 1.6
1,541,935 - -0.5
1,541,938 + -0.8
1,541,947 - -0.4
1,541,948 - 0.1
1,542,005 - 1.0
1,542,084 - -0.2
1,542,097 - -0.1