Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6593

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6592: 14960 - KOG2571 Chitin synthase/hyaluronan synthase (glycosyltransferases), at 1177177 to 1181389 14960 mRNA_6593: 14961 - KOG1616 Protein involved in Snf1 protein kinase complex assembly, at 1181934 to 1184760 14961 mRNA_6594: 14962 - Hypothetical Protein, at 1185116 to 1185583 14962

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,181,418 + -1.3
1,181,529 + 0.2
1,181,571 + 0.3
1,181,653 - 0.3
1,181,693 + -0.9
1,181,699 - -0.8
1,181,708 + -0.1
1,182,489 - 14961 mRNA_6593 0.20 0.6
1,182,911 - 14961 mRNA_6593 0.35 0.4
1,182,984 - 14961 mRNA_6593 0.37 -0.3
1,183,076 + 14961 mRNA_6593 0.40 -0.8
1,183,076 - 14961 mRNA_6593 0.40 -1.0
1,183,187 + 14961 mRNA_6593 0.44 -1.8
1,183,222 - 14961 mRNA_6593 0.46 0.3
1,183,329 + 14961 mRNA_6593 0.49 0.5
1,183,340 + 14961 mRNA_6593 0.50 -0.7
1,183,348 + 14961 mRNA_6593 0.50 -0.5
1,183,389 - 14961 mRNA_6593 0.51 -0.1
1,183,632 - 14961 mRNA_6593 0.60 0.2
1,183,634 + 14961 mRNA_6593 0.60 0.8
1,183,779 + 14961 mRNA_6593 0.65 0.3
1,183,798 + 14961 mRNA_6593 0.66 0.4
1,184,088 + 14961 mRNA_6593 0.76 -1.4
1,184,216 + 14961 mRNA_6593 0.81 -0.7
1,184,324 - 14961 mRNA_6593 0.85 0.1
1,184,360 - 14961 mRNA_6593 0.86 1.2
1,184,496 + -0.5
1,184,497 + -0.4
1,184,672 + 0.3
1,184,673 - 0.1
1,184,686 + -0.1
1,184,688 + 0.2
1,184,805 - -0.6
1,184,810 - 0.1
1,184,829 + 0.7
1,184,834 - 2.0
1,184,835 - 0.9
1,184,838 + 0.1
1,184,841 - -0.7
1,185,131 + 0.7
1,185,134 + -0.3
1,185,149 + 0.6
1,185,258 - 14962 mRNA_6594 0.30 -1.7