Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6572

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6571: 14939 - K11790 DTL, CDT2, DCAF2 denticleless, at 1128601 to 1130974 14939 mRNA_6572: 14940 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-Nuclear transport factor 2 (NTF2) domain-PF02136,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Nuclear transport factor 2 domain profile.-PS50177,SMART-WD40 repeats-SM00320,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF50998,SUPERFAMILY--SSF54427,SUPERFAMILY--SSF54928, at 1131312 to 1136542 14940 mRNA_6573: 14941 - K20472 COPZ, RET3 coatomer subunit zeta, at 1136818 to 1137633 14941

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,130,340 + 14939 mRNA_6571 0.73 -2.3
1,130,624 - 14939 mRNA_6571 0.85 -0.4
1,130,633 + 14939 mRNA_6571 0.86 0.1
1,130,914 - -0.2
1,130,915 + 0.7
1,131,051 - 0.3
1,131,062 + 0.2
1,131,075 + -0.2
1,131,080 + -1.8
1,131,083 - 0.4
1,131,204 - 0.1
1,131,223 - 1.6
1,131,237 - -0.0
1,131,260 - -0.8
1,131,281 + -0.5
1,131,515 + 0.9
1,131,596 + -1.3
1,131,992 + 14940 mRNA_6572 0.13 -0.5
1,132,071 + 14940 mRNA_6572 0.15 0.2
1,132,073 - 14940 mRNA_6572 0.15 -0.6
1,132,115 + 14940 mRNA_6572 0.15 0.6
1,132,115 + 14940 mRNA_6572 0.15 0.2
1,134,335 + 14940 mRNA_6572 0.58 0.2
1,134,732 + 14940 mRNA_6572 0.65 -1.0
1,134,906 - 14940 mRNA_6572 0.69 0.9
1,135,194 - 14940 mRNA_6572 0.74 -0.7
1,135,199 + 14940 mRNA_6572 0.74 -1.2
1,135,618 + 14940 mRNA_6572 0.82 -0.5
1,135,776 - 14940 mRNA_6572 0.85 0.9
1,135,883 + 14940 mRNA_6572 0.87 0.6
1,136,091 + -1.1
1,136,216 + -0.2
1,136,342 - -0.2
1,136,498 - 1.1
1,136,623 - 0.1