Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6571

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6570: 14938 - K09184 GATAF GATA-binding protein, other eukaryote, at 1123067 to 1127630 14938 mRNA_6571: 14939 - K11790 DTL, CDT2, DCAF2 denticleless, at 1128601 to 1130974 14939 mRNA_6572: 14940 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-Nuclear transport factor 2 (NTF2) domain-PF02136,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Nuclear transport factor 2 domain profile.-PS50177,SMART-WD40 repeats-SM00320,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF50998,SUPERFAMILY--SSF54427,SUPERFAMILY--SSF54928, at 1131312 to 1136542 14940

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,127,649 + -3.3
1,127,677 - 0.5
1,127,835 - 0.2
1,127,838 + -1.2
1,127,845 - -0.2
1,127,849 - 1.0
1,127,850 + -0.5
1,127,867 + 0.6
1,127,867 + -0.1
1,127,868 + -0.0
1,127,868 + 0.3
1,127,868 + 0.7
1,127,970 - -0.5
1,127,975 + -0.8
1,127,985 - 0.4
1,128,002 + -0.2
1,128,050 + -0.1
1,128,099 - -1.5
1,128,103 + -2.5
1,128,116 + -0.6
1,128,149 - -0.7
1,128,150 - 0.7
1,128,150 - 0.2
1,128,152 - -2.5
1,128,153 + -0.2
1,128,161 + -1.0
1,128,161 - -1.3
1,128,167 + 0.2
1,128,167 + -1.7
1,128,173 - 0.2
1,128,175 - 0.3
1,128,178 + 0.8
1,128,183 + -0.3
1,128,185 - 0.8
1,128,192 - -0.1
1,128,193 + -0.1
1,128,195 + 1.2
1,128,240 + 0.2
1,128,249 - 0.5
1,128,254 + 0.4
1,128,255 + -0.3
1,128,257 + 0.4
1,128,278 + -0.3
1,128,280 - 0.6
1,128,289 - 0.1
1,128,297 + -1.0
1,128,307 + 0.2
1,128,310 - -0.6
1,128,326 - -0.1
1,128,330 - -0.1
1,128,334 + -0.0
1,128,345 - 0.3
1,128,352 - 0.6
1,128,353 + 0.1
1,128,353 - 1.4
1,128,360 - -0.3
1,128,360 - -0.8
1,128,362 + -0.5
1,128,364 + -0.2
1,128,377 - 0.1
1,128,402 - -1.2
1,128,406 - -0.3
1,128,407 + -1.9
1,128,417 + 0.0
1,128,419 + -0.1
1,128,494 - -1.3
1,128,530 - -0.8
1,128,540 + -0.0
1,128,541 + -0.1
1,128,542 - -1.7
1,128,559 - 0.6
1,128,564 + -0.1
1,128,577 - -0.2
1,128,587 + -0.5
1,128,695 + 0.1
1,128,755 + -2.0
1,128,832 - 0.1
1,129,445 - 14939 mRNA_6571 0.36 -0.8
1,130,340 + 14939 mRNA_6571 0.73 -2.3
1,130,624 - 14939 mRNA_6571 0.85 -0.4
1,130,633 + 14939 mRNA_6571 0.86 0.1
1,130,914 - -0.2
1,130,915 + 0.7
1,131,051 - 0.3
1,131,062 + 0.2
1,131,075 + -0.2
1,131,080 + -1.8
1,131,083 - 0.4
1,131,204 - 0.1
1,131,223 - 1.6
1,131,237 - -0.0
1,131,260 - -0.8
1,131,281 + -0.5
1,131,515 + 0.9
1,131,596 + -1.3