Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6284

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6283: 14651 - HMMPfam-FHA domain-PF00498,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879, at 438750 to 440581 14651 mRNA_6284: 14652 - BLAST macrofage activating glycoprotein, putative [Rhizocto..., at 440723 to 442428 14652 mRNA_6285: 14653 - K05610 UCHL5, UCH37 ubiquitin carboxyl-terminal hydrolase L5, at 442614 to 443927 14653

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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440,318 + 14651 mRNA_6283 0.86 0.4
440,324 + 14651 mRNA_6283 0.86 0.9
440,325 + 14651 mRNA_6283 0.86 -0.3
440,331 + 14651 mRNA_6283 0.86 0.2
440,332 + 14651 mRNA_6283 0.86 -0.8
440,334 + 14651 mRNA_6283 0.86 -1.2
440,335 - 14651 mRNA_6283 0.87 0.5
440,336 - 14651 mRNA_6283 0.87 0.2
440,628 - -0.2
440,629 - 0.6
440,630 + 1.1
440,633 - 0.7
440,641 - 0.4
440,646 + 0.3
440,796 - 0.1
441,382 - 14652 mRNA_6284 0.39 -0.1
441,402 + 14652 mRNA_6284 0.40 -0.1
441,517 - 14652 mRNA_6284 0.47 0.7
441,851 + 14652 mRNA_6284 0.66 0.2
441,966 + 14652 mRNA_6284 0.73 -2.2
441,970 + 14652 mRNA_6284 0.73 -2.2
442,014 + 14652 mRNA_6284 0.76 -1.1
442,155 - 14652 mRNA_6284 0.84 0.9
442,261 + -1.5
442,388 + 0.4
442,407 + -1.1
442,428 - -0.4
442,428 + 0.2
442,431 - 0.5
442,576 + 0.8
442,714 + -0.2
443,144 - 14653 mRNA_6285 0.40 -0.1