Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5959

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5958: 14326 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1331460 to 1334052 14326 mRNA_5959: 14327 - HMMPfam-Domain of unknown function (DUF1793)-PF08760, at 1334549 to 1337487 14327 mRNA_5960: 14328 - Hypothetical Protein, at 1337799 to 1338235 14328 mRNA_5961: 14329 - HMMPfam-F-box-like-PF12937, at 1338459 to 1339688 14329

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,333,627 - 14326 mRNA_5958 0.84 0.4
1,333,690 + 14326 mRNA_5958 0.86 -0.2
1,333,698 + 14326 mRNA_5958 0.86 0.2
1,333,728 - 14326 mRNA_5958 0.87 1.5
1,333,735 - 14326 mRNA_5958 0.88 -1.4
1,333,825 + -0.7
1,333,841 + -0.5
1,333,874 + 0.9
1,333,876 - 0.3
1,333,880 - 0.8
1,333,889 + -0.8
1,333,934 + 0.7
1,333,939 - 1.8
1,333,949 + 1.3
1,334,032 - -0.7
1,334,042 - 0.4
1,334,043 - 0.4
1,334,045 - -0.0
1,334,082 - 0.3
1,334,083 + 0.1
1,334,125 + 0.1
1,334,152 - -0.7
1,334,206 - 0.4
1,334,295 - 0.1
1,334,319 + -0.1
1,334,323 + 0.0
1,334,345 - -0.8
1,334,364 + 1.4
1,334,365 + -0.3
1,334,387 - -0.1
1,334,451 - 0.0
1,334,452 - -0.0
1,334,453 + -0.2
1,334,475 + 1.9
1,334,488 + 1.1
1,334,502 - 0.3
1,334,527 + 0.8
1,334,529 + -0.8
1,334,811 + 1.6
1,334,818 + 0.9
1,334,921 + 14327 mRNA_5959 0.13 -0.2
1,334,991 - 14327 mRNA_5959 0.15 -0.3
1,335,238 - 14327 mRNA_5959 0.23 1.2
1,335,284 + 14327 mRNA_5959 0.25 -0.8
1,335,541 - 14327 mRNA_5959 0.34 0.1
1,335,673 - 14327 mRNA_5959 0.38 -0.1
1,335,839 + 14327 mRNA_5959 0.44 0.4
1,335,968 - 14327 mRNA_5959 0.48 -0.7
1,336,058 + 14327 mRNA_5959 0.51 -0.0
1,336,137 - 14327 mRNA_5959 0.54 0.7
1,336,233 + 14327 mRNA_5959 0.57 1.2
1,336,415 + 14327 mRNA_5959 0.63 0.5
1,336,425 + 14327 mRNA_5959 0.64 0.5
1,336,444 + 14327 mRNA_5959 0.64 0.4
1,336,568 + 14327 mRNA_5959 0.69 0.4
1,336,734 - 14327 mRNA_5959 0.74 -0.7
1,337,199 + 0.3
1,337,703 + -1.3
1,337,914 + 14328 mRNA_5960 0.26 0.6
1,338,010 - 14328 mRNA_5960 0.48 -1.0
1,338,108 - 14328 mRNA_5960 0.71 -0.6
1,338,117 - 14328 mRNA_5960 0.73 -0.2
1,338,160 + 14328 mRNA_5960 0.83 -0.9
1,338,163 + 14328 mRNA_5960 0.83 -0.6