Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5957

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5956: 14324 - KOG2238 Uncharacterized conserved protein TEX2, contains PH domain, at 1324543 to 1328402 14324 mRNA_5957: 14325 - HMMPfam-Eukaryotic cytochrome b561-PF03188,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665,SUPERFAMILY--SSF49344, at 1329239 to 1331004 14325 mRNA_5958: 14326 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1331460 to 1334052 14326

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,328,366 - -0.1
1,328,370 - -0.1
1,328,397 + 0.0
1,328,522 + -0.5
1,328,535 + 0.4
1,328,541 + -0.6
1,328,654 - 1.1
1,328,682 - 0.3
1,328,834 - -0.0
1,328,848 + 0.6
1,328,848 - 1.0
1,328,886 + -2.3
1,328,889 - -0.4
1,329,106 + 0.6
1,329,121 - -1.1
1,329,125 + -0.0
1,329,125 + 0.1
1,329,163 + -0.6
1,329,333 + -0.8
1,329,452 + 14325 mRNA_5957 0.12 0.0
1,329,740 + 14325 mRNA_5957 0.28 0.3
1,330,046 - 14325 mRNA_5957 0.46 -1.3
1,330,051 - 14325 mRNA_5957 0.46 1.1
1,330,059 - 14325 mRNA_5957 0.46 -1.3
1,330,195 + 14325 mRNA_5957 0.54 -0.0
1,330,339 + 14325 mRNA_5957 0.62 -0.3
1,330,361 - 14325 mRNA_5957 0.64 0.1
1,330,459 - 14325 mRNA_5957 0.69 0.6
1,330,493 + 14325 mRNA_5957 0.71 0.2
1,330,522 + 14325 mRNA_5957 0.73 -0.1
1,330,655 - 14325 mRNA_5957 0.80 -2.1
1,331,405 + 1.0
1,331,411 + 0.1
1,331,780 + 14326 mRNA_5958 0.12 -0.1
1,331,965 - 14326 mRNA_5958 0.19 0.6