Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5953

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5952: 14320 - K15198 BDP1, TFC5 transcription factor TFIIIB component B'', at 1313767 to 1316568 14320 mRNA_5953: 14321 - KOG2084 Predicted histone tail methylase containing SET domain, at 1316839 to 1317817 14321 mRNA_5954: 14322 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 1317942 to 1318810 14322

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,316,622 + -1.6
1,316,622 + 2.7
1,316,642 - 1.5
1,316,727 - -0.2
1,316,789 + 0.1
1,316,798 + 1.3
1,316,803 - -1.0
1,317,174 - 14321 mRNA_5953 0.34 -0.4
1,317,245 + 14321 mRNA_5953 0.41 -0.0
1,317,335 + 14321 mRNA_5953 0.51 0.1
1,317,418 - 14321 mRNA_5953 0.59 0.0
1,317,528 - 14321 mRNA_5953 0.70 1.1
1,317,577 - 14321 mRNA_5953 0.75 -0.3
1,317,939 - -1.0
1,317,939 - -0.1
1,317,957 - -1.3
1,317,964 - 0.3
1,318,003 - -0.8
1,318,020 - -0.2
1,318,022 + 0.5
1,318,087 - 14322 mRNA_5954 0.17 0.1
1,318,100 + 14322 mRNA_5954 0.18 -1.9
1,318,104 - 14322 mRNA_5954 0.19 -1.9
1,318,129 - 14322 mRNA_5954 0.22 1.3
1,318,412 - 14322 mRNA_5954 0.54 -0.1
1,318,426 + 14322 mRNA_5954 0.56 -0.3
1,318,612 + 14322 mRNA_5954 0.77 -1.6
1,318,646 + 14322 mRNA_5954 0.81 -1.0
1,318,689 + 14322 mRNA_5954 0.86 1.1