Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5877

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5876: 14244 - K14537 NUG2, GNL2 nuclear GTP-binding protein, at 1141307 to 1144033 14244 mRNA_5877: 14245 - K00624 E2.3.1.7 carnitine O-acetyltransferase, at 1144379 to 1146733 14245 mRNA_5878: 14246 - KOG4210 Nuclear localization sequence binding protein, at 1146916 to 1148820 14246

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,144,043 - -1.0
1,144,067 - -2.4
1,144,107 - 0.2
1,144,171 - -1.0
1,144,202 - -0.4
1,144,207 + -0.3
1,144,216 - 0.8
1,144,217 + -0.1
1,144,217 + -0.7
1,144,223 + -0.0
1,144,231 - -1.0
1,144,333 + -2.0
1,144,352 - -2.1
1,144,361 - -0.1
1,144,362 - -1.9
1,144,371 - -2.5
1,144,378 + -1.5
1,144,405 + -2.9
1,144,500 - -1.9
1,144,513 + -2.4
1,144,518 + -2.5
1,144,536 - -1.8
1,144,543 - -3.1
1,144,560 - -3.5
1,144,661 + 14245 mRNA_5877 0.12 -2.8
1,144,696 + 14245 mRNA_5877 0.13 -1.9
1,144,699 - 14245 mRNA_5877 0.14 -2.6
1,144,703 + 14245 mRNA_5877 0.14 -1.0
1,144,839 - 14245 mRNA_5877 0.20 -1.7
1,144,841 + 14245 mRNA_5877 0.20 -1.8
1,145,004 + 14245 mRNA_5877 0.27 -3.9
1,145,117 + 14245 mRNA_5877 0.31 -2.2
1,145,155 + 14245 mRNA_5877 0.33 -2.6
1,145,237 - 14245 mRNA_5877 0.36 -2.1
1,145,284 + 14245 mRNA_5877 0.38 -0.7
1,145,326 - 14245 mRNA_5877 0.40 -0.9
1,145,466 - 14245 mRNA_5877 0.46 -2.1
1,145,472 + 14245 mRNA_5877 0.46 -2.7
1,145,531 + 14245 mRNA_5877 0.49 -2.4
1,145,597 - 14245 mRNA_5877 0.52 -1.6
1,145,690 - 14245 mRNA_5877 0.56 -3.5
1,145,969 - 14245 mRNA_5877 0.68 -3.6
1,146,096 + 14245 mRNA_5877 0.73 -3.3
1,146,142 + 14245 mRNA_5877 0.75 -1.4
1,146,313 - 14245 mRNA_5877 0.82 -2.3
1,146,388 + 14245 mRNA_5877 0.85 -1.5
1,146,448 + 14245 mRNA_5877 0.88 -3.5
1,146,523 - -3.3
1,146,654 + -1.0
1,146,668 - -2.8
1,146,703 + -2.3
1,146,722 - -1.3
1,146,847 + -0.7
1,147,262 - 14246 mRNA_5878 0.18 1.4
1,147,574 - 14246 mRNA_5878 0.35 1.6