Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5745

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5744: 14112 - KOG0250 DNA repair protein RAD18 (SMC family protein), at 834713 to 839482 14112 mRNA_5745: 14113 - K11665 INO80, INOC1 DNA helicase INO80, at 840305 to 845790 14113

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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839,637 - -0.5
839,640 - 0.2
839,807 - 0.4
839,809 - 0.6
839,813 + 1.4
839,822 + 0.1
839,822 + 0.5
839,825 + -1.5
839,828 + -0.9
839,840 + 0.5
839,842 + 0.6
839,842 + 0.2
839,843 - -0.1
839,848 + 0.1
839,852 + -0.0
839,852 + 0.5
839,853 - 0.1
839,988 - -0.2
839,998 + -0.1
840,000 - 0.7
840,011 - 1.1
840,125 - -0.8
840,142 - -0.4
840,144 - 0.7
840,148 + 0.1
840,150 + 0.1
840,300 + -0.7
840,318 + 0.7
841,610 + 14113 mRNA_5745 0.24 1.5
842,016 - 14113 mRNA_5745 0.31 0.9
842,043 + 14113 mRNA_5745 0.32 -1.1
843,148 + 14113 mRNA_5745 0.52 -0.2
844,098 + 14113 mRNA_5745 0.69 1.1
844,571 - 14113 mRNA_5745 0.78 0.5
844,750 + 14113 mRNA_5745 0.81 -0.6
845,124 - 14113 mRNA_5745 0.88 -0.5
846,024 - -0.9
846,051 + -0.1
846,072 - -0.8
846,074 + -0.8
846,157 - -0.4
846,169 - 1.2
846,196 + 0.0
846,200 + 0.2
846,200 - 0.2
846,215 + -0.4
846,255 + 0.0
846,287 + -1.1
846,306 - -0.0
846,330 + -0.1
846,490 - 0.8
846,503 + -0.2
846,641 + -0.3
846,777 + -0.1
846,777 + 2.0
846,777 - -0.2