Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5693

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5692: 14060 - K07342 SEC61G, SSS1, secE protein transport protein SEC61 subunit gamma and related proteins, at 703931 to 704550 14060 mRNA_5693: 14061 - KOG4186 Peroxisomal biogenesis protein (peroxin), at 704894 to 706050 14061 mRNA_5694: 14062 - HMMPfam-Pyridoxamine 5'-phosphate oxidase-PF13883,SUPERFAMILY--SSF50475, at 706295 to 707436 14062

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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704,591 + -1.4
704,730 - 1.3
704,739 + -1.5
705,309 - 14061 mRNA_5693 0.36 -3.2
705,625 - 14061 mRNA_5693 0.63 -2.6
705,655 - 14061 mRNA_5693 0.66 -2.3
705,786 - 14061 mRNA_5693 0.77 -3.0
705,788 + 14061 mRNA_5693 0.77 -4.8
705,819 + 14061 mRNA_5693 0.80 -3.6
706,022 + -1.4
706,083 + 1.2
706,209 - 0.6
706,213 - 1.1
706,221 - -0.6
706,222 + -1.2
706,244 + 0.3
706,256 - -0.6
706,260 - 0.3
706,262 + -0.1
706,392 + -1.0
706,404 + -0.4
706,422 + 14062 mRNA_5694 0.11 -0.3
706,433 + 14062 mRNA_5694 0.12 0.1
706,435 + 14062 mRNA_5694 0.12 -0.3
706,860 + 14062 mRNA_5694 0.49 -0.9
706,872 - 14062 mRNA_5694 0.51 0.3