Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5654

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5653: 14021 - Hypothetical Protein, at 603450 to 604586 14021 mRNA_5654: 14022 - K01637 E4.1.3.1, aceA isocitrate lyase, at 605186 to 607588 14022 mRNA_5655: 14023 - K01115 PLD1_2 phospholipase D1/2, at 607805 to 615263 14023

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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604,398 + 14021 mRNA_5653 0.83 -1.1
604,546 - -0.9
604,660 - -0.7
604,709 - -0.4
604,809 + 0.0
604,811 + -0.2
604,813 - 0.4
604,850 - -1.4
604,891 - 0.4
604,893 + -0.8
604,897 - 0.5
604,900 + -0.1
604,915 + 1.2
604,916 + 1.1
604,928 - 0.2
604,928 - 0.6
604,928 - -3.3
604,934 - -0.2
604,945 - 0.3
604,987 - 0.4
604,988 - -0.8
605,001 + -0.9
605,005 - 1.0
605,005 + -0.2
605,178 - -0.1
605,456 + 14022 mRNA_5654 0.11 -2.8
605,569 + 14022 mRNA_5654 0.16 -1.2
606,167 + 14022 mRNA_5654 0.41 -3.7
606,332 + 14022 mRNA_5654 0.48 -3.8
606,899 - 14022 mRNA_5654 0.71 -2.5
607,001 - 14022 mRNA_5654 0.76 -2.7
607,063 + 14022 mRNA_5654 0.78 -3.3
607,108 - 14022 mRNA_5654 0.80 -2.0
607,157 + 14022 mRNA_5654 0.82 -3.0
607,184 - 14022 mRNA_5654 0.83 -3.6
607,186 + 14022 mRNA_5654 0.83 -2.9
607,205 + 14022 mRNA_5654 0.84 -3.3
607,206 + 14022 mRNA_5654 0.84 0.2
607,207 - 14022 mRNA_5654 0.84 -2.1
607,208 - 14022 mRNA_5654 0.84 -2.1
607,209 + 14022 mRNA_5654 0.84 -3.1
607,352 + -2.6
607,518 - -3.1
607,643 - 0.6
607,646 + -0.8
607,648 - -1.4
607,653 + -1.7
607,656 + -0.9
607,659 + -0.4
607,659 + -1.3
607,661 - -1.7
607,668 - -2.1
607,668 - 0.2
607,669 - -2.1
607,671 + -0.9
607,673 - 0.4
607,680 + 0.1
607,681 + -0.8
607,684 - -1.4
607,690 + 1.6
607,709 + 0.4
607,760 + 1.0
607,763 + -0.8
607,769 + -0.5
607,770 - -0.4
607,786 + -0.2
607,818 - -1.1
607,821 + -0.4
607,827 - -0.5
607,853 - -0.8