Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5631

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5630: 13998 - HMMPfam-SUR7/PalI family-PF06687, at 549852 to 551893 13998 mRNA_5631: 13999 - KOG4197 FOG PPR repeat, at 552322 to 556680 13999 mRNA_5632: 14000 - Hypothetical Protein, at 557069 to 557641 14000

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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551,479 + 13998 mRNA_5630 0.80 -0.2
551,779 - -0.3
551,793 + -0.3
551,808 + 0.1
551,840 + -1.2
551,842 - -0.3
551,942 - 0.5
551,945 - 0.6
551,957 - -0.2
551,961 + -0.2
551,963 - 0.3
551,964 + 1.5
551,966 + 0.3
551,971 + -0.3
551,977 + 0.2
551,979 + 0.1
551,979 + -1.2
552,118 + 0.0
552,233 + -0.6
552,418 + -0.4
552,994 - 13999 mRNA_5631 0.15 -0.2
553,584 - 13999 mRNA_5631 0.29 -0.5
553,952 - 13999 mRNA_5631 0.37 0.7
554,057 - 13999 mRNA_5631 0.40 -0.4
554,120 - 13999 mRNA_5631 0.41 -0.1
554,121 + 13999 mRNA_5631 0.41 0.1
554,414 - 13999 mRNA_5631 0.48 -0.0
554,484 - 13999 mRNA_5631 0.50 0.3
554,590 - 13999 mRNA_5631 0.52 1.8
554,645 + 13999 mRNA_5631 0.53 -0.7
554,978 - 13999 mRNA_5631 0.61 2.2
555,031 - 13999 mRNA_5631 0.62 -0.2
555,146 + 13999 mRNA_5631 0.65 0.8
555,355 + 13999 mRNA_5631 0.70 -1.1
555,667 - 13999 mRNA_5631 0.77 0.0
555,668 - 13999 mRNA_5631 0.77 0.5
555,802 + 13999 mRNA_5631 0.80 -0.4
555,803 - 13999 mRNA_5631 0.80 -0.8
556,438 - -1.5
556,528 - -1.2
556,568 + -0.7
556,658 - 0.6
556,685 + 2.1
556,831 - -0.4
556,949 + 0.1
557,273 - 14000 mRNA_5632 0.36 -0.3
557,280 - 14000 mRNA_5632 0.37 0.5
557,288 + 14000 mRNA_5632 0.38 -0.3
557,293 + 14000 mRNA_5632 0.39 0.4
557,293 + 14000 mRNA_5632 0.39 -0.1
557,300 + 14000 mRNA_5632 0.40 -0.2
557,419 + 14000 mRNA_5632 0.61 -1.2
557,437 + 14000 mRNA_5632 0.64 0.2
557,446 + 14000 mRNA_5632 0.66 -0.4