Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5508

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5508: 13876 - KOG0297 TNF receptor-associated factor, at 262441 to 263588 13876 mRNA_5509: 13877 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 264045 to 264907 13877

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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261,517 - -1.4
261,525 + 1.2
261,546 + -0.8
261,564 + 0.2
261,653 - 0.9
261,828 - -0.2
262,128 - -0.5
262,548 + -1.3
262,710 - 13876 mRNA_5508 0.23 0.1
262,723 + 13876 mRNA_5508 0.25 -0.3
262,806 + 13876 mRNA_5508 0.32 0.8
262,895 - 13876 mRNA_5508 0.40 -0.4
263,365 - 13876 mRNA_5508 0.80 -1.9
263,445 - 13876 mRNA_5508 0.87 0.2
263,578 - -1.6
263,579 + 0.3
263,582 - 1.3
263,689 - -0.4
263,708 - -0.3
263,718 - -0.0
263,727 - -0.4
263,732 + 0.9
263,732 + 1.0
263,736 - 0.2
263,749 + -1.1
263,844 + -0.5
263,878 + 2.6
264,436 - 13877 mRNA_5509 0.45 -0.9
264,473 + 13877 mRNA_5509 0.50 0.0