Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5478

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5477: 13845 - K20179 VPS11, PEP5 vacuolar protein sorting-associated protein 11, at 188584 to 192714 13845 mRNA_5478: 13846 - SUPERFAMILY--SSF81383, at 192866 to 194409 13846 mRNA_5479: 13847 - KOG3070 Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing, at 194806 to 195878 13847

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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192,339 + 0.3
192,752 - 0.9
192,792 - 1.8
192,795 - 0.0
192,796 + -0.4
192,800 + -0.5
192,816 - -0.8
192,822 + -0.1
192,823 + -0.1
192,957 - -0.8
192,962 + -0.9
193,945 - 13846 mRNA_5478 0.70 -0.1
194,019 + 13846 mRNA_5478 0.75 0.1
194,111 + 13846 mRNA_5478 0.81 0.4
194,225 + 13846 mRNA_5478 0.88 0.1
194,534 - -0.8
194,717 - -0.6
194,883 - -1.1
194,977 + 13847 mRNA_5479 0.16 -0.0