Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5447

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5446: 13814 - HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909, at 113170 to 113689 13814 mRNA_5447: 13815 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 113720 to 116134 13815 mRNA_5448: 13816 - BLAST GQ67_01206T0 [Komagataella phaffii], at 116614 to 117202 13816

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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112,833 - 0.9
112,834 - -0.1
112,845 - 0.1
112,873 + 0.6
112,893 + -0.8
112,981 - 0.5
112,996 - 0.2
113,026 - -0.7
113,721 - -0.3
113,845 + -0.3
113,850 - 0.9
113,855 + -0.1
113,882 + 0.2
113,993 - 13815 mRNA_5447 0.11 -0.4
114,144 - 13815 mRNA_5447 0.18 -0.3
114,405 - 13815 mRNA_5447 0.28 0.9
114,405 + 13815 mRNA_5447 0.28 0.9
114,447 + 13815 mRNA_5447 0.30 0.5
114,488 + 13815 mRNA_5447 0.32 -0.2
114,594 + 13815 mRNA_5447 0.36 -0.1
114,715 - 13815 mRNA_5447 0.41 0.2
114,887 - 13815 mRNA_5447 0.48 1.2
115,020 + 13815 mRNA_5447 0.54 0.5
115,170 - 13815 mRNA_5447 0.60 1.3
115,346 - 13815 mRNA_5447 0.67 0.1
115,360 - 13815 mRNA_5447 0.68 -0.1
115,421 + 13815 mRNA_5447 0.70 -1.2
115,460 + 13815 mRNA_5447 0.72 2.5
115,862 + 13815 mRNA_5447 0.89 -0.3
115,997 - -0.7
116,016 + -0.1
116,034 - 2.0
116,041 + -2.6
116,056 - -0.4
116,083 + -1.3
116,203 - 0.7
116,208 - 0.5
116,619 + -0.3
116,633 + -0.6
116,659 - 0.6
116,803 - 13816 mRNA_5448 0.32 0.1
116,803 + 13816 mRNA_5448 0.32 0.1
116,803 - 13816 mRNA_5448 0.32 -0.3
116,894 + 13816 mRNA_5448 0.48 3.5
116,926 + 13816 mRNA_5448 0.53 -0.6
117,073 + 13816 mRNA_5448 0.78 -0.2