Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5414

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5413: 13781 - ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 43823 to 46039 13781 mRNA_5414: 13782 - HMMPfam-Glycosyl transferase family 2-PF13704, at 46162 to 47875 13782

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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45,176 - 13781 mRNA_5413 0.61 0.1
45,275 + 13781 mRNA_5413 0.65 1.0
45,595 + 13781 mRNA_5413 0.80 0.5
45,623 - 13781 mRNA_5413 0.81 -0.7
45,669 - 13781 mRNA_5413 0.83 0.5
45,678 - 13781 mRNA_5413 0.84 -2.4
45,678 - 13781 mRNA_5413 0.84 -2.4
45,684 + 13781 mRNA_5413 0.84 0.3
45,706 + 13781 mRNA_5413 0.85 0.2
45,709 + 13781 mRNA_5413 0.85 0.2
45,715 - 13781 mRNA_5413 0.85 0.0
45,999 + -1.4
46,007 - -1.3
46,120 - -0.6
46,124 - -0.1
46,132 - -1.1
46,154 - 0.0
46,156 - 0.1
46,446 - 13782 mRNA_5414 0.17 -0.8
46,447 + 13782 mRNA_5414 0.17 -0.3
46,448 - 13782 mRNA_5414 0.17 0.3
46,540 - 13782 mRNA_5414 0.22 -0.6
46,629 + 13782 mRNA_5414 0.27 -0.7
46,671 + 13782 mRNA_5414 0.30 -2.4
46,746 - 13782 mRNA_5414 0.34 -1.2
47,024 + 13782 mRNA_5414 0.50 -0.1
47,065 + 13782 mRNA_5414 0.53 -0.3
47,072 + 13782 mRNA_5414 0.53 -1.0
47,076 + 13782 mRNA_5414 0.53 -0.8
47,078 + 13782 mRNA_5414 0.53 2.0
47,182 - 13782 mRNA_5414 0.60 -0.4
47,323 - 13782 mRNA_5414 0.68 -0.9
47,335 - 13782 mRNA_5414 0.68 -1.0
47,340 - 13782 mRNA_5414 0.69 -2.3
47,607 - 13782 mRNA_5414 0.84 -0.2
47,618 + 13782 mRNA_5414 0.85 -1.3
47,628 + 13782 mRNA_5414 0.86 -1.1
47,635 + 13782 mRNA_5414 0.86 -1.6
47,639 - 13782 mRNA_5414 0.86 -1.1
47,729 - -0.8
47,759 + -0.1
48,073 + -0.2
48,165 - -0.2
48,654 - -1.5
48,833 - -0.4