Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5274

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5273: 13641 - K00004 BDH, butB (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase, at 332530 to 334206 13641 mRNA_5274: 13642 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 334553 to 337184 13642 mRNA_5275: 13643 - K06688 UBE2C, UBC11 ubiquitin-conjugating enzyme E2 C, at 337519 to 338338 13643

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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333,675 - 13641 mRNA_5273 0.68 -0.8
333,689 + 13641 mRNA_5273 0.69 -0.3
334,097 - -0.6
334,292 - 0.4
334,311 - 1.1
334,345 + -0.7
334,383 - -1.2
334,385 + -2.1
334,432 + 1.4
334,574 - 0.1
334,584 + -0.4
334,590 - 1.1
334,732 - -1.1
334,994 - 13642 mRNA_5274 0.17 -1.7
335,365 - 13642 mRNA_5274 0.31 -0.7
335,436 + 13642 mRNA_5274 0.34 -1.6
335,464 + 13642 mRNA_5274 0.35 -0.9
335,609 - 13642 mRNA_5274 0.40 -1.9
336,012 + 13642 mRNA_5274 0.55 -2.0
336,370 + 13642 mRNA_5274 0.69 -1.7
336,769 - 13642 mRNA_5274 0.84 -1.4
336,917 - 13642 mRNA_5274 0.90 -0.3
337,037 + -1.1
337,091 - 0.8
337,101 + -1.9
337,249 + -0.1
337,249 - -1.7
337,252 + -0.4
337,362 + 0.8
337,362 + -0.7
337,365 - 0.1
337,371 - -0.2
337,385 + -1.6
337,496 + -0.8
337,532 + -1.4
337,871 + 13643 mRNA_5275 0.43 0.0
337,979 - 13643 mRNA_5275 0.56 -1.2
338,097 - 13643 mRNA_5275 0.70 -1.2
338,106 - 13643 mRNA_5275 0.72 -2.5
338,149 + 13643 mRNA_5275 0.77 0.5