Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5155

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5154: 13522 - HMMPfam-Beta-lactamase superfamily domain-PF12706,SUPERFAMILY--SSF56281, at 28775 to 30256 13522 mRNA_5155: 13523 - BLAST unknown [Tremella fuciformis], at 30718 to 32151 13523 mRNA_5156: 13524 - K00108 betA, CHDH choline dehydrogenase, at 32964 to 35897 13524

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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29,726 + 13522 mRNA_5154 0.64 0.6
29,881 + 13522 mRNA_5154 0.75 1.9
30,028 + 13522 mRNA_5154 0.85 -1.8
30,177 + -0.6
30,313 + 0.5
30,512 - 0.4
30,520 - 0.8
30,605 + -0.1
30,735 - 1.3
30,747 + 1.1
30,761 - 2.0
30,794 - 0.9
31,173 - 13523 mRNA_5155 0.32 -0.2
31,199 - 13523 mRNA_5155 0.34 0.3
31,333 + 13523 mRNA_5155 0.43 0.8
31,339 - 13523 mRNA_5155 0.43 2.5
31,767 - 13523 mRNA_5155 0.73 1.1
31,933 + 13523 mRNA_5155 0.85 0.4
32,279 - 0.3
32,281 - 0.2
32,367 + 0.1
32,367 + -1.8
32,371 + 1.1
32,375 + 0.2
32,377 - -0.3
32,387 - 1.3
32,387 - 1.9
32,387 - -1.1
32,387 - 1.5
32,395 + 0.2
32,395 + 0.7
32,395 + -1.1
32,395 + 0.2
32,395 + -1.3
32,503 - 0.6
32,554 + 1.4
32,562 + 0.3
32,708 + -0.4
32,710 + 0.8
32,783 + -1.0
32,809 + 0.1
32,835 + -0.6
32,859 + 2.4
32,893 - 0.0
32,898 - 0.6
33,147 - 0.4