Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5122

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5121: 13489 - K01137 GNS N-acetylglucosamine-6-sulfatase, at 1809104 to 1811514 13489 mRNA_5122: 13490 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1811957 to 1814516 13490 mRNA_5123: 13491 - K14826 FPR3_4 FK506-binding nuclear protein, at 1815032 to 1816842 13491

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,811,061 - 13489 mRNA_5121 0.81 0.7
1,811,194 - 13489 mRNA_5121 0.87 -0.2
1,811,194 - 13489 mRNA_5121 0.87 -0.3
1,811,203 - 13489 mRNA_5121 0.87 -0.6
1,811,284 - 0.3
1,811,288 + -1.0
1,811,315 - -0.1
1,811,345 + -0.4
1,811,488 - 0.6
1,811,489 - 0.5
1,811,496 + -1.6
1,811,501 + 0.0
1,811,502 + -0.7
1,811,524 + 0.5
1,811,532 + 0.9
1,811,540 + -0.5
1,811,543 + -0.1
1,811,550 - 0.3
1,811,563 - 1.3
1,811,579 - -0.8
1,811,580 + 0.2
1,811,587 - -1.0
1,811,588 + -0.1
1,811,594 + 0.1
1,811,617 + -0.5
1,811,618 + 0.1
1,811,621 + -0.2
1,811,623 + -1.1
1,811,629 + 0.1
1,811,747 + -0.3
1,811,759 - 0.4
1,811,775 + 0.5
1,811,799 - -0.3
1,811,818 + -0.8
1,812,095 - -0.7
1,812,531 - 13490 mRNA_5122 0.22 -0.3
1,812,770 + 13490 mRNA_5122 0.32 0.2
1,812,915 - 13490 mRNA_5122 0.37 -0.7
1,813,123 - 13490 mRNA_5122 0.46 -0.3
1,813,976 - 13490 mRNA_5122 0.79 0.3
1,814,088 + 13490 mRNA_5122 0.83 -0.6
1,814,091 - 13490 mRNA_5122 0.83 1.3
1,814,121 - 13490 mRNA_5122 0.85 -1.3
1,814,140 + 13490 mRNA_5122 0.85 0.5
1,814,304 + -0.2
1,814,422 + 0.7
1,815,304 + 13491 mRNA_5123 0.15 -0.6