Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5118

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5117: 13485 - KOG0254 Predicted transporter (major facilitator superfamily), at 1797781 to 1800000 13485 mRNA_5118: 13486 - K05349 bglX beta-glucosidase, at 1800635 to 1803494 13486 mRNA_5119: 13487 - HMMPfam-LysM domain-PF01476,SMART-Lysin motif-SM00257,SUPERFAMILY--SSF54106, at 1804045 to 1805977 13487

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,799,765 + 13485 mRNA_5117 0.89 0.5
1,799,777 - 13485 mRNA_5117 0.90 0.2
1,800,066 - 1.4
1,800,073 + -0.6
1,800,346 - 0.6
1,800,349 - -0.5
1,800,360 + -2.4
1,800,389 - -0.2
1,800,392 - 1.2
1,800,396 - 0.8
1,800,431 - -0.1
1,800,432 - -0.4
1,800,435 - -0.1
1,800,436 - -0.4
1,800,439 + -1.3
1,800,442 - -0.6
1,800,445 + -0.2
1,800,456 + 0.0
1,800,458 + 0.5
1,800,466 - 1.2
1,800,491 + 0.6
1,800,509 + 0.2
1,800,516 + -0.5
1,800,617 - -0.2
1,800,664 - -0.1
1,800,669 - -0.6
1,801,069 - 13486 mRNA_5118 0.15 0.5
1,801,224 - 13486 mRNA_5118 0.21 0.5
1,801,839 + 13486 mRNA_5118 0.42 0.1
1,802,012 - 13486 mRNA_5118 0.48 -0.7
1,802,534 - 13486 mRNA_5118 0.66 0.4
1,802,838 - 13486 mRNA_5118 0.77 0.2
1,802,988 + 13486 mRNA_5118 0.82 -0.3
1,803,130 - 13486 mRNA_5118 0.87 0.1
1,803,405 + -0.4
1,803,549 - 0.5
1,803,551 - -0.1
1,803,552 - -0.2
1,803,552 + -0.7
1,803,560 + -0.2
1,803,564 - 0.3
1,803,573 - 1.2
1,803,573 - -0.3
1,803,574 + -0.2
1,803,588 - -0.2
1,803,589 + 0.1
1,803,607 - -0.6
1,803,609 + -0.1
1,803,642 + -0.9
1,803,739 - -0.3
1,804,201 + 0.0