Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5071

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5070: 13438 - KOG3346 Phosphatidylethanolamine binding protein, at 1676835 to 1677879 13438 mRNA_5071: 13439 - KOG3038 Histone acetyltransferase SAGA associated factor SGF29, at 1678198 to 1679552 13439

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,677,966 - -0.5
1,677,983 - -0.3
1,678,115 - -0.2
1,678,127 + -2.7
1,678,434 - 13439 mRNA_5071 0.17 1.1
1,678,438 + 13439 mRNA_5071 0.18 0.8
1,678,449 - 13439 mRNA_5071 0.19 1.1
1,678,529 - 13439 mRNA_5071 0.24 -0.9
1,678,582 + 13439 mRNA_5071 0.28 1.6
1,678,712 + 13439 mRNA_5071 0.38 1.1
1,678,990 - 13439 mRNA_5071 0.58 1.1
1,679,293 - 13439 mRNA_5071 0.81 1.2
1,679,319 - 13439 mRNA_5071 0.83 1.3
1,679,319 - 13439 mRNA_5071 0.83 1.1
1,679,324 + 13439 mRNA_5071 0.83 0.6
1,679,326 + 13439 mRNA_5071 0.83 1.0
1,679,429 - 0.5
1,679,439 - 1.3
1,679,440 + 0.6
1,679,448 - 1.5
1,679,471 + 1.4
1,679,473 + 1.3
1,679,575 - -0.5
1,679,602 - 0.5
1,679,604 - -0.2
1,679,604 - 0.5
1,679,608 + -0.2
1,679,617 - 0.7
1,679,617 - 0.2
1,679,620 + 0.9
1,679,620 + 0.1
1,679,620 - -1.1
1,679,626 - 0.4
1,679,627 + 1.1
1,679,633 - 0.9
1,679,633 + -0.1
1,679,634 - 0.9
1,679,634 - 0.6
1,679,701 - 1.0
1,679,739 - 0.2
1,679,746 + -1.1
1,679,752 - 1.0
1,679,775 + 1.3
1,680,053 - -0.7
1,680,054 - 0.3
1,680,060 + 0.6