Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5061

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5060: 13428 - HMMPfam-Glycosyl transferase family 2-PF00535,HMMPfam-Glycosyl transferase family 8-PF01501,HMMPfam-Glycosyl transferase 4-like domain-PF13579,SUPERFAMILY--SSF53448,SUPERFAMILY--SSF53756, at 1654681 to 1660965 13428 mRNA_5061: 13429 - K11414 SIRT4, SIR2L4 NAD-dependent deacetylase sirtuin 4, at 1661158 to 1662498 13429 mRNA_5062: 13430 - HMMPfam-Zinc-binding-PF12907,SUPERFAMILY--SSF118359, at 1662567 to 1663555 13430

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,660,525 + -0.8
1,660,527 + -1.1
1,660,533 - -0.4
1,660,560 - 1.5
1,660,613 + 1.3
1,660,620 - 0.0
1,660,620 + -0.9
1,660,640 + 0.1
1,660,773 - -0.9
1,660,885 - -1.6
1,660,886 - -0.5
1,660,893 + -1.5
1,661,142 - -1.4
1,661,466 - 13429 mRNA_5061 0.23 1.6
1,661,475 - 13429 mRNA_5061 0.24 -0.9
1,661,489 + 13429 mRNA_5061 0.25 1.2
1,661,516 - 13429 mRNA_5061 0.27 0.8
1,661,611 - 13429 mRNA_5061 0.34 -0.0
1,661,634 + 13429 mRNA_5061 0.35 -0.4
1,661,817 - 13429 mRNA_5061 0.49 -0.3
1,661,937 - 13429 mRNA_5061 0.58 -0.6
1,662,074 + 13429 mRNA_5061 0.68 1.6
1,662,474 - -1.1
1,662,482 - 0.4
1,662,493 + -0.4
1,662,643 + 0.8
1,662,740 - 13430 mRNA_5062 0.17 1.1
1,662,764 - 13430 mRNA_5062 0.20 1.1
1,662,769 - 13430 mRNA_5062 0.20 -0.6
1,662,770 - 13430 mRNA_5062 0.21 -0.5
1,662,784 + 13430 mRNA_5062 0.22 -0.8
1,662,797 - 13430 mRNA_5062 0.23 -0.7
1,662,955 + 13430 mRNA_5062 0.39 -1.0
1,663,085 + 13430 mRNA_5062 0.52 0.4
1,663,494 - -2.4