Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5058

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5057: 13425 - K03252 EIF3C translation initiation factor 3 subunit C, at 1647426 to 1650006 13425 mRNA_5058: 13426 - K07249 E1.2.1.36 retinal dehydrogenase, at 1650225 to 1652548 13426 mRNA_5059: 13427 - KOG0022 Alcohol dehydrogenase, class III, at 1652748 to 1654435 13427

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,649,924 + -0.5
1,650,089 + -0.9
1,650,120 + -0.6
1,650,222 - 0.5
1,650,235 + -1.4
1,650,237 + -2.6
1,650,922 - 13426 mRNA_5058 0.30 -2.1
1,650,970 + 13426 mRNA_5058 0.32 -2.8
1,650,976 - 13426 mRNA_5058 0.32 -1.0
1,651,286 + 13426 mRNA_5058 0.46 -1.0
1,651,305 - 13426 mRNA_5058 0.46 -2.1
1,651,562 + 13426 mRNA_5058 0.58 -0.2
1,651,700 - 13426 mRNA_5058 0.63 -0.8
1,651,884 + 13426 mRNA_5058 0.71 -2.6
1,652,308 + 13426 mRNA_5058 0.90 -1.3
1,652,448 - -1.2
1,652,461 + -0.4
1,652,461 + 1.4
1,652,605 + 0.6
1,652,610 + -0.5
1,652,615 - 0.2
1,652,616 + 1.5
1,652,620 - -0.6
1,652,630 - -0.8
1,652,630 - -0.8
1,652,632 + -2.3
1,652,633 + -0.4
1,652,636 + 0.1
1,652,636 - 1.0
1,652,674 + -1.1
1,652,715 - -0.7
1,652,732 + -0.7
1,652,770 - -1.2
1,653,005 + 13427 mRNA_5059 0.15 -0.7
1,653,007 - 13427 mRNA_5059 0.15 -0.5
1,653,146 - 13427 mRNA_5059 0.24 -0.9
1,653,190 + 13427 mRNA_5059 0.26 0.1
1,653,337 + 13427 mRNA_5059 0.35 -0.5