Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5045

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5044: 13412 - K04717 SGPP2 sphingosine-1-phosphate phosphotase 2, at 1626185 to 1628118 13412 mRNA_5045: 13413 - K01111 E3.1.3.68 2-deoxyglucose-6-phosphatase, at 1628554 to 1629804 13413 mRNA_5046: 13414 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 1630371 to 1631224 13414

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,627,960 + -0.7
1,628,020 + -0.8
1,628,089 + -1.6
1,628,158 + -0.4
1,628,296 - 0.2
1,628,306 + -1.4
1,628,311 + 0.2
1,628,320 - 0.0
1,628,444 - 0.1
1,628,444 - -0.7
1,628,446 + 0.6
1,628,449 + -0.9
1,628,449 + 0.4
1,628,449 + -0.8
1,628,453 + -0.2
1,628,454 - 0.3
1,628,455 + 0.2
1,628,458 - 1.8
1,628,596 - -0.2
1,628,603 - 0.4
1,628,610 + -0.0
1,628,635 + -0.5
1,629,029 + 13413 mRNA_5045 0.38 -0.7
1,629,334 + 13413 mRNA_5045 0.62 -0.1
1,629,491 - 13413 mRNA_5045 0.75 -1.0
1,629,787 + 0.3
1,629,899 + -0.3
1,629,918 - 0.0
1,629,936 + 1.7
1,630,193 - 0.1
1,630,341 + 0.0
1,630,351 - -0.1
1,630,362 + 0.7
1,630,633 - 13414 mRNA_5046 0.31 -0.6
1,630,638 + 13414 mRNA_5046 0.31 0.1
1,630,738 - 13414 mRNA_5046 0.43 0.5
1,630,776 - 13414 mRNA_5046 0.47 0.0