Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5020

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5019: 13387 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1560613 to 1563320 13387 mRNA_5020: 13388 - K20178 VPS8 vacuolar protein sorting-associated protein 8, at 1563647 to 1569301 13388 mRNA_5021: 13389 - K14347 SLC10A7, P7 solute carrier family 10 (sodium/bile acid cotransporter), member 7, at 1569492 to 1571260 13389

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,563,267 - 0.5
1,563,274 + -0.6
1,563,281 + -0.2
1,563,285 - -0.9
1,563,413 - 0.7
1,563,534 - 0.5
1,563,558 + -0.2
1,563,581 + -2.3
1,563,862 - -0.3
1,564,025 - 0.0
1,564,752 + 13388 mRNA_5020 0.20 -0.5
1,565,057 + 13388 mRNA_5020 0.25 -2.1
1,565,758 - 13388 mRNA_5020 0.37 -2.4
1,565,927 - 13388 mRNA_5020 0.40 -1.6
1,568,642 + 13388 mRNA_5020 0.88 0.0
1,568,965 + -1.3
1,569,242 + -1.7
1,569,361 + -0.2
1,569,375 - -1.4
1,569,382 - 0.4
1,569,390 - 0.5
1,569,413 + 2.0
1,569,413 - -1.0
1,569,415 - -0.5
1,569,419 - -0.6
1,569,495 - 0.2
1,569,562 + 0.5
1,569,700 + 13389 mRNA_5021 0.12 0.6