Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4944

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4943: 13311 - K13095 SF1 splicing factor 1, at 1372018 to 1374079 13311 mRNA_4944: 13312 - KOG1375 Beta tubulin, at 1374400 to 1376265 13312 mRNA_4945: 13313 - Hypothetical Protein, at 1376497 to 1378672 13313

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,373,982 - 0.3
1,374,118 - -0.1
1,374,128 + -1.3
1,374,133 + -0.2
1,374,254 - -0.2
1,374,276 - -1.0
1,374,277 - -1.0
1,374,285 + 1.1
1,374,413 + 0.6
1,374,452 + 0.7
1,375,574 - 13312 mRNA_4944 0.63 -0.9
1,375,848 + 13312 mRNA_4944 0.78 -0.3
1,375,859 + 13312 mRNA_4944 0.78 0.0
1,375,867 - 13312 mRNA_4944 0.79 -0.4
1,376,005 + 13312 mRNA_4944 0.86 0.8
1,376,010 + 13312 mRNA_4944 0.86 -0.4
1,376,171 + 0.7
1,376,277 - 0.5
1,376,287 - -0.2
1,376,294 - -0.9
1,376,426 + -0.5
1,376,430 + 0.2
1,376,434 - 1.0
1,376,439 - -0.0
1,376,450 - 0.5
1,376,459 - 0.6
1,376,583 - 0.1
1,376,594 - -0.1
1,376,597 + 0.8
1,376,733 - 13313 mRNA_4945 0.11 0.3
1,376,753 + 13313 mRNA_4945 0.12 0.1
1,376,867 - 13313 mRNA_4945 0.17 -0.3
1,377,036 - 13313 mRNA_4945 0.25 0.2
1,377,042 + 13313 mRNA_4945 0.25 0.1
1,377,050 - 13313 mRNA_4945 0.25 -0.2
1,377,095 + 13313 mRNA_4945 0.27 -2.6