Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4931

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4930: 13298 - HMMPfam-Ubiquitin family-PF00240,HMMPfam-BAG domain-PF02179,ProSiteProfiles-Ubiquitin domain profile.-PS50053,ProSiteProfiles-BAG domain profile.-PS51035,SMART-BAG domains, present in regulator of Hsp70 proteins-SM00264,SUPERFAMILY--SSF54236,SUPERFAMILY--SSF63491, at 1342722 to 1344500 13298 mRNA_4931: 13299 - ProSiteProfiles-BTB domain profile.-PS50097, at 1344834 to 1346285 13299 mRNA_4932: 13300 - K11547 NDC80, HEC1, TID3 kinetochore protein NDC80, at 1346785 to 1349520 13300

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,344,014 + 13298 mRNA_4930 0.73 1.2
1,344,423 - -0.8
1,344,619 - -0.3
1,344,743 + 0.5
1,345,334 + 13299 mRNA_4931 0.34 -1.3
1,345,373 + 13299 mRNA_4931 0.37 0.2
1,345,471 + 13299 mRNA_4931 0.44 0.2
1,345,776 + 13299 mRNA_4931 0.65 -0.3
1,345,776 - 13299 mRNA_4931 0.65 -0.2
1,345,915 + 13299 mRNA_4931 0.74 0.1
1,345,929 - 13299 mRNA_4931 0.75 0.8
1,346,161 - -0.0
1,346,643 - 0.4
1,346,657 + -0.0