Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4929

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4928: 13296 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011,HMMPfam-ML-like domain-PF14558, at 1337111 to 1340226 13296 mRNA_4929: 13297 - K01956 carA, CPA1 carbamoyl-phosphate synthase small subunit, at 1340791 to 1342395 13297 mRNA_4930: 13298 - HMMPfam-Ubiquitin family-PF00240,HMMPfam-BAG domain-PF02179,ProSiteProfiles-Ubiquitin domain profile.-PS50053,ProSiteProfiles-BAG domain profile.-PS51035,SMART-BAG domains, present in regulator of Hsp70 proteins-SM00264,SUPERFAMILY--SSF54236,SUPERFAMILY--SSF63491, at 1342722 to 1344500 13298

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,340,268 + 1.3
1,340,289 - 0.1
1,340,301 + -1.1
1,340,322 - 1.1
1,340,333 - -0.3
1,340,340 + -0.5
1,340,341 - -0.2
1,340,342 + 0.1
1,340,361 + -0.1
1,340,479 + 0.5
1,340,482 + -0.2
1,340,486 + -0.5
1,340,492 + 0.4
1,340,493 - -0.9
1,340,516 - -0.2
1,340,520 + -0.7
1,340,547 - 0.1
1,340,628 - -0.1
1,340,662 + -0.1
1,340,987 + 13297 mRNA_4929 0.12 -2.6
1,341,206 + 13297 mRNA_4929 0.26 -1.2
1,341,668 + 13297 mRNA_4929 0.55 -4.1
1,341,673 + 13297 mRNA_4929 0.55 -3.9
1,341,675 - 13297 mRNA_4929 0.55 -3.7
1,341,922 - 13297 mRNA_4929 0.70 -2.1
1,341,926 + 13297 mRNA_4929 0.71 -1.8
1,342,181 + 13297 mRNA_4929 0.87 -3.2
1,342,247 + -2.1
1,342,359 - -2.4
1,342,492 - -0.8
1,342,494 - -1.9
1,342,494 - -5.0
1,342,498 - 0.0
1,342,511 + -2.0
1,342,624 + -0.6
1,342,651 - -0.9
1,342,655 + -1.7
1,342,662 - -1.3
1,342,663 - -0.2
1,342,663 + 0.1
1,342,673 - -0.0
1,342,677 + 0.2
1,342,680 + 0.2
1,342,708 + -0.5
1,342,774 + 0.3
1,342,797 - 1.1
1,342,799 - 0.7
1,342,801 - -1.6
1,342,804 + 0.7
1,342,807 + -1.3
1,342,810 - 0.2
1,342,817 + 0.7
1,342,820 - 1.2
1,342,824 + 0.6
1,342,825 + -1.5
1,342,826 - -0.4
1,342,836 - 1.1
1,342,862 + -0.5
1,343,004 - 13298 mRNA_4930 0.16 -0.4
1,343,147 + 13298 mRNA_4930 0.24 -0.7
1,343,153 + 13298 mRNA_4930 0.24 -1.3
1,343,262 - 13298 mRNA_4930 0.30 1.4
1,343,262 - 13298 mRNA_4930 0.30 -1.0
1,343,285 - 13298 mRNA_4930 0.32 0.4
1,343,296 - 13298 mRNA_4930 0.32 0.2