Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4928

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4927: 13295 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 1334760 to 1336928 13295 mRNA_4928: 13296 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011,HMMPfam-ML-like domain-PF14558, at 1337111 to 1340226 13296 mRNA_4929: 13297 - K01956 carA, CPA1 carbamoyl-phosphate synthase small subunit, at 1340791 to 1342395 13297

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,336,747 + 0.5
1,336,783 + 1.0
1,336,915 - -0.1
1,337,080 - 0.2
1,337,147 - -0.1
1,337,228 - -1.1
1,337,672 - 13296 mRNA_4928 0.18 -0.8
1,337,758 - 13296 mRNA_4928 0.21 0.3
1,337,839 - 13296 mRNA_4928 0.23 -0.7
1,338,988 + 13296 mRNA_4928 0.60 -0.6
1,339,312 - 13296 mRNA_4928 0.71 0.5
1,339,584 - 13296 mRNA_4928 0.79 -0.6
1,339,601 + 13296 mRNA_4928 0.80 -0.3
1,339,709 + 13296 mRNA_4928 0.83 0.5
1,339,732 + 13296 mRNA_4928 0.84 0.5
1,339,733 + 13296 mRNA_4928 0.84 -0.7
1,340,268 + 1.3
1,340,289 - 0.1
1,340,301 + -1.1
1,340,322 - 1.1
1,340,333 - -0.3
1,340,340 + -0.5
1,340,341 - -0.2
1,340,342 + 0.1
1,340,361 + -0.1
1,340,479 + 0.5
1,340,482 + -0.2
1,340,486 + -0.5
1,340,492 + 0.4
1,340,493 - -0.9
1,340,516 - -0.2
1,340,520 + -0.7
1,340,547 - 0.1
1,340,628 - -0.1
1,340,662 + -0.1
1,340,987 + 13297 mRNA_4929 0.12 -2.6
1,341,206 + 13297 mRNA_4929 0.26 -1.2