Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4561

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4560: 12928 - Hypothetical Protein, at 463085 to 464279 12928 mRNA_4561: 12929 - K06990 MEMO1 MEMO1 family protein, at 464488 to 466003 12929 mRNA_4562: 12930 - K11366 USP22_27_51, UBP8 ubiquitin carboxyl-terminal hydrolase 22/27/51, at 466499 to 468748 12930

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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463,888 + 12928 mRNA_4560 0.67 -0.2
464,053 - 12928 mRNA_4560 0.81 0.3
464,163 + -0.3
464,335 + -2.3
464,335 + -1.0
464,342 + -0.9
464,371 + -0.5
464,393 - 0.1
464,444 + -0.7
464,541 - 0.0
464,547 + -0.1
464,556 - -0.4
464,563 - -0.6
465,113 - 12929 mRNA_4561 0.41 0.9
465,712 - 12929 mRNA_4561 0.81 0.7
465,742 + 12929 mRNA_4561 0.83 -0.1
465,894 - -0.4
465,996 + 0.1
465,996 + -0.6
466,006 - -0.5
466,021 + -0.2
466,157 - -1.1
466,174 + -1.5
466,178 - 1.2
466,183 + 0.1
466,324 - -0.0
466,325 + 0.0
466,332 - -0.1
466,333 + 0.5
466,333 + -0.7
466,473 + 0.1
466,473 + -0.7
466,480 - -0.7
466,490 - -0.2
466,770 + 12930 mRNA_4562 0.12 0.9
466,783 + 12930 mRNA_4562 0.13 0.3
466,928 + 12930 mRNA_4562 0.19 -1.7
466,930 - 12930 mRNA_4562 0.19 -1.8
466,932 - 12930 mRNA_4562 0.19 -1.1