Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4555

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4554: 12922 - K12585 DIS3, RRP44 exosome complex exonuclease DIS3/RRP44, at 447758 to 451562 12922 mRNA_4555: 12923 - KOG3855 Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis, at 452202 to 455003 12923 mRNA_4556: 12924 - KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes, at 455167 to 456572 12924

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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451,614 + 1.4
451,616 + 0.1
451,661 + 1.7
451,740 - -1.3
451,742 - -0.3
451,757 + -1.2
451,784 + -0.2
451,842 - -1.2
451,854 - 0.1
451,857 - 0.7
451,860 - 0.1
451,933 + -0.1
451,933 - 2.3
451,935 - 0.5
451,935 + -1.1
451,938 - 0.2
451,940 + 1.1
451,947 - 1.2
451,947 - 1.3
451,966 - -0.0
451,973 + -0.8
451,975 + -0.6
451,976 + 1.0
451,977 + 0.1
452,094 - -0.2
452,150 + 2.4
452,248 - -0.1
452,427 - -1.0
452,664 - 12923 mRNA_4555 0.16 1.8
452,799 - 12923 mRNA_4555 0.21 -0.1
452,867 - 12923 mRNA_4555 0.24 -0.4
453,302 - 12923 mRNA_4555 0.39 -0.6
453,446 - 12923 mRNA_4555 0.44 0.7
453,448 - 12923 mRNA_4555 0.44 -0.4
453,451 + 12923 mRNA_4555 0.45 -1.2
453,597 + 12923 mRNA_4555 0.50 -0.1
453,625 + 12923 mRNA_4555 0.51 -1.3
453,720 + 12923 mRNA_4555 0.54 0.0
453,854 - 12923 mRNA_4555 0.59 -0.1
453,951 + 12923 mRNA_4555 0.62 0.6
453,963 + 12923 mRNA_4555 0.63 -0.1
454,725 - 0.5
455,273 - 1.1
455,294 + 0.0
455,786 + 12924 mRNA_4556 0.44 1.0
455,964 - 12924 mRNA_4556 0.57 -1.8