Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4535

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4534: 12902 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 400318 to 402345 12902 mRNA_4535: 12903 - Hypothetical Protein, at 402768 to 403548 12903 mRNA_4536: 12904 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 404129 to 405942 12904

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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402,083 - 12902 mRNA_4534 0.87 0.2
402,088 + 12902 mRNA_4534 0.87 -0.2
402,185 - 0.1
402,216 + 0.2
402,337 - -1.3
402,379 - -0.2
402,484 + -1.7
402,487 - -0.1
402,490 + -0.5
402,497 - -0.0
402,506 - 1.9
402,509 - -0.0
402,511 - -0.4
402,517 + 0.6
402,517 + 0.0
402,518 - 0.3
402,519 + -0.2
402,524 - -0.3
402,527 - -0.8
402,529 + -1.4
402,529 + -0.6
402,530 + -1.3
402,530 + 0.5
402,573 - 0.6
402,578 + -0.4
402,602 - 0.5
402,602 + 0.1
402,604 - 0.2
402,609 + 1.0
402,612 + 0.4
402,613 + 0.2
402,629 + -1.0
402,654 + -0.1
402,663 - -0.3
402,665 - -0.4
402,678 - 0.2
402,679 - 0.2
402,679 - 0.6
402,690 + -0.0
402,693 + -0.3
402,706 - 1.0
402,738 - 1.2
402,753 - -0.6
402,877 - 12903 mRNA_4535 0.14 0.6
403,015 - 12903 mRNA_4535 0.32 -0.6
403,334 + 12903 mRNA_4535 0.72 -1.0
403,442 - 12903 mRNA_4535 0.86 -2.1
404,314 + 12904 mRNA_4536 0.10 -1.0
404,463 + 12904 mRNA_4536 0.18 1.1