Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4385

Experiments: YNB Oleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4384: 12752 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 65499 to 68176 12752 mRNA_4385: 12753 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 68273 to 69417 12753 mRNA_4386: 12754 - BLAST polysaccharide lyase family 14 protein [Hypholoma sub..., at 70020 to 71335 12754

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
remove
67,280 - 12752 mRNA_4384 0.67 0.8
67,638 - 12752 mRNA_4384 0.80 -0.5
67,885 - 12752 mRNA_4384 0.89 0.8
67,887 - 12752 mRNA_4384 0.89 0.4
67,920 - 0.3
68,005 + -0.7
68,016 + -0.3
68,017 + 0.1
68,086 - 0.2
68,087 - -1.3
68,090 - 0.7
68,099 + -0.6
68,109 - -1.9
68,216 + -0.7
68,241 - 0.3
68,338 + -0.7
68,503 + 12753 mRNA_4385 0.20 -0.0
68,536 + 12753 mRNA_4385 0.23 -1.9
68,648 - 12753 mRNA_4385 0.33 -0.1
68,731 - 12753 mRNA_4385 0.40 -2.0
68,772 + 12753 mRNA_4385 0.44 -1.2
69,019 - 12753 mRNA_4385 0.65 -1.7
69,022 - 12753 mRNA_4385 0.65 0.9
69,030 + 12753 mRNA_4385 0.66 -0.6
69,331 - -0.8
69,361 + -0.2
69,372 - -0.4
69,431 - -0.0
69,483 + 2.2
69,513 - -1.0
69,526 - 0.0
69,563 + -0.7
69,621 + -3.2
69,710 + -0.4
70,023 + -0.6