Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4321

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4320: 12688 - K03255 TIF31, CLU1 protein TIF31, at 1895347 to 1900311 12688 mRNA_4321: 12689 - K14960 CXXC1, SPP1, CPS40 COMPASS component SPP1, at 1900603 to 1903265 12689

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,899,653 - 12688 mRNA_4320 0.87 -0.0
1,899,667 + 12688 mRNA_4320 0.87 0.2
1,899,675 + 12688 mRNA_4320 0.87 0.1
1,899,773 - 12688 mRNA_4320 0.89 -1.1
1,899,784 - 12688 mRNA_4320 0.89 -3.4
1,899,821 + -1.2
1,899,959 + -0.6
1,900,262 + -1.9
1,900,394 + -2.3
1,900,397 + 0.5
1,900,412 + -1.6
1,900,420 - 0.4
1,900,427 + 0.6
1,900,437 + 0.5
1,901,274 + 12689 mRNA_4321 0.25 1.4
1,902,043 + 12689 mRNA_4321 0.54 -0.0
1,902,236 - 12689 mRNA_4321 0.61 0.7
1,902,290 - 12689 mRNA_4321 0.63 -0.1
1,902,849 + 12689 mRNA_4321 0.84 0.9
1,902,891 + 12689 mRNA_4321 0.86 1.2
1,902,895 + 12689 mRNA_4321 0.86 0.9
1,903,009 - 0.2
1,903,024 - 0.9
1,903,026 - 1.0
1,903,032 + 0.1
1,903,161 - 0.8
1,903,200 - 0.9
1,903,201 - 0.8
1,903,309 + 0.3
1,903,460 + -0.1
1,903,463 + 0.1
1,903,465 - 0.5
1,903,468 - 0.3
1,903,471 - -0.2
1,903,486 + 0.9
1,903,630 + -0.2
1,903,642 - 0.3
1,903,772 - -0.0
1,903,773 + 0.3
1,903,773 + -0.4
1,903,784 - 0.1
1,903,788 - -0.0
1,903,792 - -0.0
1,903,793 + -0.7
1,903,794 + -1.0
1,903,804 - -1.5
1,903,864 - 0.1
1,903,864 - -0.5
1,903,868 + -0.8
1,903,890 - 0.3
1,903,999 + 0.1
1,904,020 - 1.1
1,904,160 - 0.6
1,904,166 - 0.5
1,904,168 + 0.4
1,904,172 + 0.5
1,904,175 - 0.4
1,904,179 + -1.2
1,904,183 - -0.2