Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4300

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4299: 12667 - K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1, at 1832408 to 1835999 12667 mRNA_4300: 12668 - K08257 E3.2.1.101 mannan endo-1,6-alpha-mannosidase, at 1836268 to 1838617 12668

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,836,000 + -1.6
1,836,164 + 0.2
1,836,171 + -0.3
1,836,183 + -0.3
1,836,185 - 0.3
1,836,188 + 1.3
1,836,189 + -1.0
1,836,222 + -0.2
1,836,730 + 12668 mRNA_4300 0.20 -1.3
1,836,958 - 12668 mRNA_4300 0.29 -0.4
1,837,073 + 12668 mRNA_4300 0.34 -2.0
1,837,788 + 12668 mRNA_4300 0.65 -0.4
1,838,107 + 12668 mRNA_4300 0.78 -2.9
1,838,808 - -0.1
1,838,818 + -0.4
1,838,835 + 0.4
1,838,919 + -1.9
1,839,019 + 0.5