Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4234

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4233: 12601 - K11096 SNRPD2, SMD2 small nuclear ribonucleoprotein D2, at 1678008 to 1678995 12601 mRNA_4234: 12602 - SUPERFAMILY--SSF56112, at 1679173 to 1681802 12602 mRNA_4235: 12603 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1682242 to 1685142 12603

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,679,074 + 0.2
1,679,175 + -0.6
1,679,193 + 1.0
1,679,234 + 1.9
1,679,338 - 0.2
1,679,347 - -2.1
1,679,490 - 12602 mRNA_4234 0.12 -0.3
1,679,756 - 12602 mRNA_4234 0.22 -0.4
1,679,759 - 12602 mRNA_4234 0.22 0.2
1,679,979 + 12602 mRNA_4234 0.31 -1.5
1,680,114 - 12602 mRNA_4234 0.36 -3.9
1,680,191 - 12602 mRNA_4234 0.39 -0.5
1,680,199 + 12602 mRNA_4234 0.39 -0.9
1,680,406 + 12602 mRNA_4234 0.47 0.8
1,680,763 - 12602 mRNA_4234 0.60 -0.0
1,680,784 + 12602 mRNA_4234 0.61 -0.3
1,680,916 + 12602 mRNA_4234 0.66 -0.9
1,680,970 + 12602 mRNA_4234 0.68 0.1
1,681,233 - 12602 mRNA_4234 0.78 -1.9
1,681,669 + -0.5
1,681,695 + -0.3
1,681,802 - -0.2
1,681,803 + -0.7
1,681,803 - -1.2
1,681,813 + -0.6
1,681,903 + -1.5
1,681,937 - 0.6
1,681,941 - -0.5
1,681,959 - -0.1
1,682,269 - -2.2
1,682,274 + -0.8
1,682,278 - -0.8
1,682,280 + 1.7
1,682,391 - 0.0
1,682,427 + 0.0
1,682,562 + 12603 mRNA_4235 0.11 -0.6
1,682,637 + 12603 mRNA_4235 0.14 -0.1
1,682,694 - 12603 mRNA_4235 0.16 0.2
1,682,731 + 12603 mRNA_4235 0.17 -0.4