Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4226

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4225: 12593 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 1654260 to 1655493 12593 mRNA_4226: 12594 - K00700 GBE1, glgB 1,4-alpha-glucan branching enzyme, at 1655813 to 1659134 12594 mRNA_4227: 12595 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF48452, at 1659342 to 1664294 12595

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,654,928 + 12593 mRNA_4225 0.54 -1.5
1,655,203 - 12593 mRNA_4225 0.76 0.3
1,655,304 + 12593 mRNA_4225 0.85 0.2
1,655,307 - 12593 mRNA_4225 0.85 0.3
1,655,484 + -1.7
1,655,501 - 0.7
1,655,624 + -1.3
1,655,628 + 0.4
1,655,639 + 0.2
1,655,643 + 0.2
1,655,740 - -0.5
1,655,821 - -0.4
1,655,838 - -0.6
1,656,070 + -1.4
1,656,082 - -0.9
1,656,220 + 12594 mRNA_4226 0.12 -1.1
1,656,230 + 12594 mRNA_4226 0.13 -1.6
1,656,231 - 12594 mRNA_4226 0.13 -0.9
1,656,231 + 12594 mRNA_4226 0.13 -1.9
1,656,389 + 12594 mRNA_4226 0.17 -2.3
1,656,505 - 12594 mRNA_4226 0.21 -1.3
1,656,562 - 12594 mRNA_4226 0.23 -1.3
1,656,654 + 12594 mRNA_4226 0.25 -2.0
1,656,985 + 12594 mRNA_4226 0.35 -2.7
1,656,988 - 12594 mRNA_4226 0.35 -1.9
1,657,128 + 12594 mRNA_4226 0.40 -3.5
1,657,308 + 12594 mRNA_4226 0.45 1.4
1,657,520 - 12594 mRNA_4226 0.51 -1.4
1,657,525 + 12594 mRNA_4226 0.52 0.2
1,657,527 - 12594 mRNA_4226 0.52 -1.8
1,657,797 - 12594 mRNA_4226 0.60 -0.3
1,658,412 + 12594 mRNA_4226 0.78 -2.0
1,658,482 + 12594 mRNA_4226 0.80 -1.6
1,658,507 - 12594 mRNA_4226 0.81 -1.3
1,658,511 + 12594 mRNA_4226 0.81 -1.6
1,658,523 + 12594 mRNA_4226 0.82 -2.3
1,658,574 + 12594 mRNA_4226 0.83 -1.7
1,658,661 - 12594 mRNA_4226 0.86 -1.4
1,658,668 + 12594 mRNA_4226 0.86 0.9
1,658,835 - -2.2
1,658,843 - -1.8
1,658,856 - -2.4
1,658,959 - -1.1
1,658,979 - -1.7
1,658,982 + -1.8
1,659,044 + -1.7
1,659,118 + 0.0
1,659,158 + -1.8
1,659,158 + 0.9
1,659,275 + -1.1
1,659,478 + -0.8
1,659,901 + 12595 mRNA_4227 0.11 -0.1