Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4187

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4186: 12554 - KOG2806 Chitinase, at 1564500 to 1566078 12554 mRNA_4187: 12555 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 1566413 to 1568898 12555 mRNA_4188: 12556 - KOG4372 Predicted alpha/beta hydrolase, at 1569066 to 1571020 12556

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,566,122 - -0.5
1,566,145 - -0.3
1,566,567 + -0.3
1,566,655 - -2.2
1,566,724 - 12555 mRNA_4187 0.13 -1.1
1,566,865 - 12555 mRNA_4187 0.18 -1.4
1,567,899 + 12555 mRNA_4187 0.60 -2.1
1,567,904 + 12555 mRNA_4187 0.60 -1.0
1,568,190 - 12555 mRNA_4187 0.71 -1.2
1,568,342 - 12555 mRNA_4187 0.78 -1.7
1,568,631 - 12555 mRNA_4187 0.89 -0.0
1,568,645 - 12555 mRNA_4187 0.90 -2.7
1,568,660 + -0.7
1,568,748 - -1.4
1,568,763 - -1.1
1,568,795 - -1.8
1,568,797 + -1.6
1,568,816 + -1.3
1,568,910 - -1.4
1,568,924 - -0.1
1,568,927 + 0.2
1,568,934 - 0.1
1,568,935 + -0.4
1,568,937 - -0.7
1,568,940 + -0.6
1,568,940 + -0.0
1,568,943 - 0.3
1,568,944 - -0.3
1,568,945 - 0.2
1,568,946 + -0.7
1,568,946 - -0.5
1,568,947 - -1.6
1,568,951 - -0.1
1,568,953 - -0.1
1,568,954 - -1.3
1,568,958 + -1.3
1,568,958 - -1.9
1,568,958 + -1.6
1,568,971 - -0.3
1,568,974 - 0.2
1,568,975 + -1.1
1,568,976 - -0.3
1,568,978 + 0.2
1,568,981 + -1.5
1,569,017 - 1.2
1,569,035 + 0.1
1,569,126 + 0.7
1,569,243 - 0.3
1,569,590 + 12556 mRNA_4188 0.27 -1.0
1,569,729 + 12556 mRNA_4188 0.34 0.2
1,569,848 - 12556 mRNA_4188 0.40 -0.3
1,569,848 - 12556 mRNA_4188 0.40 0.1