Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4186

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4185: 12553 - KOG1212 Amidases, at 1562094 to 1563941 12553 mRNA_4186: 12554 - KOG2806 Chitinase, at 1564500 to 1566078 12554 mRNA_4187: 12555 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 1566413 to 1568898 12555

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,563,556 + 12553 mRNA_4185 0.79 -0.9
1,563,597 + 12553 mRNA_4185 0.81 -1.0
1,563,597 + 12553 mRNA_4185 0.81 0.2
1,564,360 + 1.7
1,564,386 - -1.0
1,564,544 - 0.0
1,564,547 + -0.3
1,564,549 - -0.1
1,564,675 - 12554 mRNA_4186 0.11 0.7
1,564,689 - 12554 mRNA_4186 0.12 -0.5
1,564,817 + 12554 mRNA_4186 0.20 -1.1
1,564,834 + 12554 mRNA_4186 0.21 -2.5
1,566,122 - -0.5
1,566,145 - -0.3
1,566,567 + -0.3
1,566,655 - -2.2
1,566,724 - 12555 mRNA_4187 0.13 -1.1
1,566,865 - 12555 mRNA_4187 0.18 -1.4