Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4138

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4137: 12505 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 1443015 to 1447458 12505 mRNA_4138: 12506 - HMMPfam-Cytochrome c oxidase subunit VIIa-PF02238, at 1448098 to 1448646 12506 mRNA_4139: 12507 - K14846 RPF1 ribosome production factor 1, at 1448982 to 1450816 12507

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,447,212 - 0.3
1,447,217 + -0.1
1,447,478 - -1.1
1,447,570 - 0.2
1,447,770 - -0.3
1,447,788 + -0.1
1,447,947 + 0.3
1,447,950 + 0.8
1,448,046 + 0.2
1,448,060 + 0.4
1,448,060 - -0.0
1,448,215 - 12506 mRNA_4138 0.21 -2.5
1,448,363 + 12506 mRNA_4138 0.48 -1.8
1,448,439 - 12506 mRNA_4138 0.62 1.4
1,448,524 - 12506 mRNA_4138 0.78 0.5
1,448,661 - -2.0
1,448,663 - -0.5
1,448,669 - -0.6