Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3965

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3964: 12332 - Hypothetical Protein, at 1014027 to 1014928 12332 mRNA_3965: 12333 - Hypothetical Protein, at 1015715 to 1016506 12333 mRNA_3966: 12334 - KOG2157 Predicted tubulin-tyrosine ligase, at 1016759 to 1018391 12334

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,014,725 + 12332 mRNA_3964 0.77 0.5
1,014,823 + 12332 mRNA_3964 0.88 -0.2
1,014,824 + 12332 mRNA_3964 0.88 -0.1
1,014,940 + 0.2
1,014,951 + 0.1
1,014,955 - 0.2
1,014,956 - 0.4
1,014,956 + -0.1
1,014,956 + -0.5
1,014,966 + -3.4
1,014,968 - -0.2
1,014,968 - 0.3
1,014,969 + -0.1
1,014,969 + -0.1
1,014,972 - -0.3
1,014,977 + -0.5
1,014,978 + 0.2
1,014,979 + -0.0
1,014,984 + 1.1
1,014,993 - 0.4
1,015,005 + -1.3
1,015,009 - 1.2
1,015,014 + 0.4
1,015,121 + 1.1
1,015,131 + -0.3
1,015,250 - -0.3
1,015,255 - -0.2
1,015,980 - 12333 mRNA_3965 0.33 -0.5
1,015,981 - 12333 mRNA_3965 0.34 -1.3
1,015,986 + 12333 mRNA_3965 0.34 -0.7
1,016,018 + 12333 mRNA_3965 0.38 -1.0
1,016,038 - 12333 mRNA_3965 0.41 -0.6
1,016,131 - 12333 mRNA_3965 0.53 -0.0
1,016,137 - 12333 mRNA_3965 0.53 -0.4
1,016,166 - 12333 mRNA_3965 0.57 -0.6
1,016,275 - 12333 mRNA_3965 0.71 0.7
1,016,281 - 12333 mRNA_3965 0.71 0.9
1,016,291 + 12333 mRNA_3965 0.73 0.1
1,016,296 - 12333 mRNA_3965 0.73 -0.5
1,016,297 - 12333 mRNA_3965 0.73 0.0
1,016,425 + 12333 mRNA_3965 0.90 1.2
1,016,426 - 12333 mRNA_3965 0.90 1.0
1,016,440 + 0.7
1,016,443 + -0.2
1,016,443 - -1.3
1,016,444 + -1.3
1,016,449 - -0.3
1,016,459 + -2.1
1,016,460 - -0.9
1,016,462 - 0.0
1,016,472 + -1.5
1,016,472 + 1.1
1,016,473 + -0.1
1,016,473 - 0.8
1,016,474 + 0.4
1,016,497 - 0.4
1,016,507 + -0.9
1,016,512 + 0.2
1,016,515 - -0.9
1,016,516 + 0.2
1,016,517 - -0.7
1,016,542 + -1.2
1,016,575 + -1.1
1,016,598 - -0.2
1,016,603 - -0.1
1,016,607 - -0.5
1,016,615 - -0.3
1,016,626 - 0.6
1,016,634 - -0.7
1,016,768 - -0.2
1,016,915 - 1.0
1,017,062 + 12334 mRNA_3966 0.19 0.0
1,017,210 - 12334 mRNA_3966 0.28 2.2
1,017,211 + 12334 mRNA_3966 0.28 -0.5
1,017,381 + 12334 mRNA_3966 0.38 0.2
1,017,385 + 12334 mRNA_3966 0.38 -0.4
1,017,414 + 12334 mRNA_3966 0.40 0.4
1,017,495 - 12334 mRNA_3966 0.45 -0.4
1,017,499 + 12334 mRNA_3966 0.45 0.1
1,017,506 + 12334 mRNA_3966 0.46 0.5