Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3961

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3961: 12329 - KOG3519 Invasion-inducing protein TIAM1/CDC24 and related RhoGEF GTPases, at 1008252 to 1011828 12329 mRNA_3962: 12330 - K09647 IMP1 mitochondrial inner membrane protease subunit 1, at 1012069 to 1012859 12330

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,007,371 + -0.1
1,007,373 - 0.3
1,007,377 - 0.7
1,007,377 - -0.5
1,007,409 - -0.4
1,007,423 - 0.1
1,007,521 + 1.4
1,007,535 + 0.3
1,007,558 + 0.1
1,007,666 + 0.4
1,007,672 + 0.0
1,007,700 + -0.1
1,007,701 - -0.3
1,007,845 + -0.4
1,008,126 - -0.9
1,008,146 - -0.7
1,009,797 - 12329 mRNA_3961 0.43 0.3
1,009,951 - 12329 mRNA_3961 0.47 -0.2
1,010,292 + 12329 mRNA_3961 0.57 -4.8
1,010,836 + 12329 mRNA_3961 0.72 1.1
1,010,951 - 12329 mRNA_3961 0.75 -0.7
1,010,952 + 12329 mRNA_3961 0.75 0.2
1,010,998 - 12329 mRNA_3961 0.77 0.9
1,011,724 + 1.0
1,012,020 - 0.5
1,012,046 + -0.8