Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3817

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3816: 12184 - KOG3613 Dopey and related predicted leucine zipper transcription factors, at 648075 to 655221 12184 mRNA_3817: 12185 - SUPERFAMILY--SSF52047, at 655525 to 657844 12185 mRNA_3818: 12186 - K09650 PARL, PSARL, PCP1 rhomboid-like protein, at 657932 to 659126 12186

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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654,630 + 0.6
654,720 + 0.3
654,874 - 0.9
654,877 - 1.1
654,903 - 0.9
655,022 - -0.9
655,026 - 1.0
655,039 + -0.2
655,150 - 0.9
655,169 + 0.3
655,179 + -1.5
655,185 - -0.1
655,191 + 1.3
655,195 + -0.8
655,211 - 0.3
655,342 - -0.3
655,496 - 0.8
655,507 - -0.1
655,538 - -0.9
655,564 - -1.0
655,771 - 12185 mRNA_3817 0.11 -1.4
655,833 - 12185 mRNA_3817 0.13 0.3
656,113 - 12185 mRNA_3817 0.25 -1.6
656,542 - 12185 mRNA_3817 0.44 -0.5
656,577 + 12185 mRNA_3817 0.45 1.0
656,793 - 12185 mRNA_3817 0.55 0.0
656,856 + 12185 mRNA_3817 0.57 0.5
656,868 - 12185 mRNA_3817 0.58 0.2
656,934 + 12185 mRNA_3817 0.61 -0.0
656,958 - 12185 mRNA_3817 0.62 1.8
656,961 - 12185 mRNA_3817 0.62 -0.3
656,962 + 12185 mRNA_3817 0.62 -0.1
657,027 + 12185 mRNA_3817 0.65 0.2
657,222 - 12185 mRNA_3817 0.73 -0.2
657,234 + 12185 mRNA_3817 0.74 -0.1
657,235 + 12185 mRNA_3817 0.74 0.7
657,433 - 12185 mRNA_3817 0.82 -1.1
657,438 - 12185 mRNA_3817 0.82 -0.1
657,676 - 0.5
657,704 - -0.6
658,049 - 0.2
658,118 - 12186 mRNA_3818 0.16 -2.0
658,122 + 12186 mRNA_3818 0.16 0.8
658,455 - 12186 mRNA_3818 0.44 -0.2
658,649 - 12186 mRNA_3818 0.60 1.6
658,729 - 12186 mRNA_3818 0.67 0.3
658,843 - 12186 mRNA_3818 0.76 -0.5