Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3777

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3776: 12144 - HMMPfam-FHA domain-PF00498,HMMPfam-Ring finger domain-PF13639,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879,SUPERFAMILY--SSF57850, at 553955 to 556574 12144 mRNA_3777: 12145 - K20346 TMED4_9_11 p24 family protein alpha, at 557180 to 558034 12145 mRNA_3778: 12146 - HMMPfam-Endonuclease V-PF04493, at 558485 to 559797 12146

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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556,367 - 0.5
556,513 + -0.9
556,517 - -1.2
556,688 - 0.2
556,810 + 0.2
556,815 - 0.1
556,818 - -0.6
556,827 + 0.7
556,832 - -1.0
556,842 - -1.3
556,880 - -0.6
556,928 - -0.8
556,973 - -1.2
556,978 - -0.1
556,980 - 1.8
556,981 - -0.1
556,983 - -0.1
557,005 - 0.3
557,007 + -0.5
557,017 + 0.7
557,027 + -0.4
557,041 + 0.3
557,322 - 12145 mRNA_3777 0.17 0.2
557,419 - 12145 mRNA_3777 0.28 0.6
557,455 - 12145 mRNA_3777 0.32 0.8
557,564 + 12145 mRNA_3777 0.45 0.6
557,597 + 12145 mRNA_3777 0.49 2.3
558,032 - 0.8
558,305 + -0.3
558,306 - 0.7
558,335 + 1.8
558,442 - -0.1
558,459 + 0.6
558,607 - -1.1
558,917 + 12146 mRNA_3778 0.33 0.8